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1164 2997d 15h werner /branches/iland_regen/src/ found unexpected behavior of irandom(): obviously, it return *never* the upper bound.
eg. irandom(0,3) -> values 0,1, or 2, but never 3.
changed calls to irandom() accordingly.
added also a better random selection of species in the establishment routine
 
1163 2997d 20h werner /branches/iland_regen/src/ removed the "sapling.h" everywhere.
open:
* establishment: use better random order of species (e.g. by providing N random lists in speciesSet)
 
1162 2997d 21h werner /branches/iland_regen/src/ removed the old "mSaplings" from resource unit/model.
Open Issues:
* ActPlanting [init/remove of saplings]
* MapGrid: retrieve list of saplings
* testing of standloader
 
1161 2997d 23h werner /branches/iland_regen/src/core/ water limitation of establishment  
1160 2998d 14h werner /branches/iland_regen/src/core/ bug-fixes of the new establishment module (carbon)

first part of the YNP water limitation in establishment.
 
1159 2999d 10h werner /branches/iland_regen/src/ Changed memory layout of regeneration module.
problems now with invalid (NaN) soil values. Needs further analysis ;)
 
1158 2999d 16h werner /branches/iland_regen/src/ further performance improvements in regeneration/sapling module.
In total (sim 80 yrs WBT 2km2, from bare ground), iLand is +- 35% faster:
* seed dispersal (not today)
* optimized use of LRI-correction
* better linearization in sapling growth (height growth potential)
 
1157 2999d 23h werner /branches/iland_regen/ merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch).  
1118 3055d 19h werner /branches/iland_regen/src/core/ fixes for the new saplings, now it almost works as expected.  
1117 3057d 12h werner /branches/iland_regen/src/ including loading of saplings of snapshots....  
1115 3060d 13h werner /branches/iland_regen/src/ integrating sapling growth, testing  
1114 3060d 14h werner /branches/iland_regen/src/ new output for tree removals ("landscape_removed").  
1113 3060d 17h werner /branches/iland_regen/src/core/ integrating sapling growth...  
1112 3060d 17h werner /branches/iland_regen/src/core/ integrating the sapling growth (not finished yet)  
1111 3061d 14h werner /branches/iland_regen/src/ first draft of the new "establishment"
added the "Saplings", the new container for establishment/sapling growth
some basic functionality is already there...
 
1107 3066d 19h werner /branches/iland_regen/src/core/ changed the way the stocked area is calculated for not fully stocked stands. Test case was the YNP simulations of pinus contorta. It was the case that at low stocking levels (e.g. LAI=0.01, 20 trees/ha) too much light was intercepted thus boosting tree growth. We devised a more precise way of calculating stocked area based on tree crowns of individual trees. See also the test conducted for the site.  
1106 3068d 17h werner /branches/iland_regen/src/core/ change in seed-dispersal:
(i) add a third pass that aims to remove very small holes from the seed-maps (in order to decrease the number of "edges")
(ii) fixed a bug that caused having a large number of edges (always a problem, when modifying a grid while iterating over it...).
This reduces run-time (WBT) of seed-dispersal by 66%.
 
1104 3069d 21h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
1103 3069d 21h werner /branches/port_qt5_64bit/src/core/ fix phenology error message for very cold climates (Alaska). Now the effective vegetation period is of 0 length in such cases.  
1102 3070d 10h werner /branches/port_qt5_64bit/src/ fixed couple of clang warnings.

some debugging/profiling work w.r.t. establishment/regen.
 

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