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1180 2948d 21h werner /branches/iland_regen/src/ major rewrite of the seed distribution module:
* dispersal kernels fixed (using seeds per area, and not per radius)
* seed production now depends on leaf area of species (on source pixels)
* distribution for all source pixels (skipped the shortcut via continuously covered forest)
* probability of establishment calculated as function of available seedlings (sum of all incoming seedlings)
still testing ;)
more automation functions (e.g. to call OS commands, additional JS event handlers)
 
/branches/iland_regen/src/core/modelcontroller.cpp
/branches/iland_regen/src/core/seeddispersal.cpp
/branches/iland_regen/src/core/seeddispersal.h
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/species.h
/branches/iland_regen/src/core/tree.cpp
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/tools/scriptglobal.cpp
/branches/iland_regen/src/tools/scriptglobal.h
1165 2991d 21h werner /branches/iland_regen/src/ implementation of sprouting  
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/species.h
/branches/iland_regen/src/core/tree.cpp
/branches/iland_regen/src/plugins/fire/firemodule.cpp
1164 2996d 23h werner /branches/iland_regen/src/ found unexpected behavior of irandom(): obviously, it return *never* the upper bound.
eg. irandom(0,3) -> values 0,1, or 2, but never 3.
changed calls to irandom() accordingly.
added also a better random selection of species in the establishment routine
 
/branches/iland_regen/src/abe/scheduler.cpp
/branches/iland_regen/src/core/climate.cpp
/branches/iland_regen/src/core/grid.h
/branches/iland_regen/src/core/management.cpp
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/speciesset.cpp
/branches/iland_regen/src/core/speciesset.h
/branches/iland_regen/src/core/standloader.cpp
/branches/iland_regen/src/core/tree.cpp
/branches/iland_regen/src/iland/tests.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/iland_regen/src/plugins/fire/firemodule.cpp
/branches/iland_regen/src/tools/randomgenerator.h
1157 2999d 07h werner /branches/iland_regen/ merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch).  
/branches/iland_regen/src/output/waterout.cpp
/branches/iland_regen/src/output/waterout.h
/branches/iland_regen
/branches/iland_regen/src/abe/actsalvage.cpp
/branches/iland_regen/src/abe/actsalvage.h
/branches/iland_regen/src/abe/fmstand.cpp
/branches/iland_regen/src/abe/fmstand.h
/branches/iland_regen/src/abe/fmtreelist.cpp
/branches/iland_regen/src/abe/fmunit.cpp
/branches/iland_regen/src/abe/fmunit.h
/branches/iland_regen/src/abe/forestmanagementengine.cpp
/branches/iland_regen/src/abe/forestmanagementengine.h
/branches/iland_regen/src/abe/output/abestandout.cpp
/branches/iland_regen/src/abe/output/abestandremovalout.cpp
/branches/iland_regen/src/abe/scheduler.cpp
/branches/iland_regen/src/abe/scheduler.h
/branches/iland_regen/src/core/climate.h
/branches/iland_regen/src/core/grasscover.h
/branches/iland_regen/src/core/grid.h
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/model.h
/branches/iland_regen/src/core/modelcontroller.cpp
/branches/iland_regen/src/core/production3pg.cpp
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/resourceunit.h
/branches/iland_regen/src/core/resourceunitspecies.cpp
/branches/iland_regen/src/core/sapling.cpp
/branches/iland_regen/src/core/snag.cpp
/branches/iland_regen/src/core/snag.h
/branches/iland_regen/src/core/soil.cpp
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/speciesset.cpp
/branches/iland_regen/src/core/standloader.cpp
/branches/iland_regen/src/core/standstatistics.cpp
/branches/iland_regen/src/core/standstatistics.h
/branches/iland_regen/src/core/threadrunner.cpp
/branches/iland_regen/src/core/threadrunner.h
/branches/iland_regen/src/core/tree.cpp
/branches/iland_regen/src/core/tree.h
/branches/iland_regen/src/core/watercycle.cpp
/branches/iland_regen/src/core/watercycle.h
/branches/iland_regen/src/iland/iland.pro
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/iland/tests.cpp
/branches/iland_regen/src/iland/version.cpp
/branches/iland_regen/src/ilandc/consoleshell.cpp
/branches/iland_regen/src/ilandc/ilandc.pro
/branches/iland_regen/src/output/carbonflowout.cpp
/branches/iland_regen/src/output/carbonflowout.h
/branches/iland_regen/src/output/carbonout.cpp
/branches/iland_regen/src/output/carbonout.h
/branches/iland_regen/src/output/dynamicstandout.cpp
/branches/iland_regen/src/output/landscapeout.cpp
/branches/iland_regen/src/output/managementout.cpp
/branches/iland_regen/src/output/outputmanager.cpp
/branches/iland_regen/src/output/snapshot.cpp
/branches/iland_regen/src/output/standout.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetle.pro
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/iland_regen/src/plugins/barkbeetle/barkbeetleout.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlescript.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlescript.h
/branches/iland_regen/src/plugins/fire/fire.pro
/branches/iland_regen/src/plugins/fire/firemodule.cpp
/branches/iland_regen/src/plugins/wind/wind.pro
/branches/iland_regen/src/plugins/wind/windmodule.cpp
/branches/iland_regen/src/plugins/wind/windmodule.h
/branches/iland_regen/src/plugins/wind/windscript.cpp
/branches/iland_regen/src/plugins/wind/windscript.h
/branches/iland_regen/src/tools/colors.cpp
/branches/iland_regen/src/tools/expressionwrapper.cpp
/branches/iland_regen/src/tools/gisgrid.cpp
/branches/iland_regen/src/tools/gisgrid.h
/branches/iland_regen/src/tools/globalsettings.cpp
/branches/iland_regen/src/tools/globalsettings.h
/branches/iland_regen/src/tools/scriptglobal.cpp
/branches/iland_regen/src/tools/scriptglobal.h
1118 3055d 03h werner /branches/iland_regen/src/core/ fixes for the new saplings, now it almost works as expected.  
/branches/iland_regen/src/core/grid.h
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/resourceunit.h
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/tree.cpp
1114 3059d 22h werner /branches/iland_regen/src/ new output for tree removals ("landscape_removed").  
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/model.h
/branches/iland_regen/src/core/tree.cpp
/branches/iland_regen/src/core/tree.h
/branches/iland_regen/src/output/landscapeout.cpp
/branches/iland_regen/src/output/landscapeout.h
/branches/iland_regen/src/output/outputmanager.cpp
/branches/iland_regen/src/output/standdeadout.cpp
1104 3069d 05h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
/branches/iland_regen
1102 3069d 18h werner /branches/port_qt5_64bit/src/ fixed couple of clang warnings.

some debugging/profiling work w.r.t. establishment/regen.
 
/branches/port_qt5_64bit/src/core/establishment.cpp
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/seeddispersal.cpp
/branches/port_qt5_64bit/src/core/seeddispersal.h
/branches/port_qt5_64bit/src/core/soil.cpp
/branches/port_qt5_64bit/src/core/stamp.cpp
/branches/port_qt5_64bit/src/core/stampcontainer.cpp
/branches/port_qt5_64bit/src/core/standloader.cpp
/branches/port_qt5_64bit/src/core/standstatistics.cpp
/branches/port_qt5_64bit/src/core/timeevents.cpp
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
/branches/port_qt5_64bit/src/output/outputmanager.cpp
/branches/port_qt5_64bit/src/output/treeout.cpp
/branches/port_qt5_64bit/src/output/treeout.h
/branches/port_qt5_64bit/src/tools/xmlhelper.cpp
/branches/port_qt5_64bit/src/tools/xmlhelper.h
1100 3090d 01h werner /branches/port_qt5_64bit/src/ trying declaring the GRASSCOVERSTEPS in the cpp file.
some additional cleanups.
 
/branches/port_qt5_64bit/src/core/grasscover.cpp
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/output/snapshot.cpp
1088 3137d 23h werner /branches/port_qt5_64bit/src/ salavage management bark beetle damages
some fixes w.r.t. the correct extent of grids.
added "year" as stand varaible (abe).
 
/branches/port_qt5_64bit/src/abe/actsalvage.cpp
/branches/port_qt5_64bit/src/abe/actsalvage.h
/branches/port_qt5_64bit/src/abe/fmstand.cpp
/branches/port_qt5_64bit/src/abe/fomewrapper.cpp
/branches/port_qt5_64bit/src/abe/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/core/grid.h
/branches/port_qt5_64bit/src/core/layeredgrid.h
/branches/port_qt5_64bit/src/core/snag.cpp
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlescript.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlescript.h
/branches/port_qt5_64bit/src/plugins/wind/windscript.cpp
/branches/port_qt5_64bit/src/tools/spatialanalysis.cpp
1077 3160d 03h werner /branches/port_qt5_64bit/src/ implemented stormInfestationProbability in bark beetle module.
added path() function in Globals JS object.
 
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetleplugin.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.h
1072 3173d 17h werner /branches/port_qt5_64bit/src/core/ mortality exercise for PROFOUND COST action.  
/branches/port_qt5_64bit/src/core/modelcontroller.cpp
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
1071 3173d 23h werner /branches/port_qt5_64bit/src/ alternative mortality formulation
COST PROFOUND exercise (H. Bugmann)
 
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.h
1064 3181d 23h werner /branches/port_qt5_64bit/src/ many changes. Most notably:
* improvements in the grass-cover sub Modules
* interaction between wind and bark beetle
* javascript function to extract seed-distribution-maps
* fixed a bug when continuous seed input was assumed
 
/branches/port_qt5_64bit/src/abe/fmstand.cpp
/branches/port_qt5_64bit/src/abe/fmstand.h
/branches/port_qt5_64bit/src/abe/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/abe/forestmanagementengine.h
/branches/port_qt5_64bit/src/core/environment.cpp
/branches/port_qt5_64bit/src/core/grasscover.cpp
/branches/port_qt5_64bit/src/core/grasscover.h
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/modelcontroller.h
/branches/port_qt5_64bit/src/core/seeddispersal.cpp
/branches/port_qt5_64bit/src/core/seeddispersal.h
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/port_qt5_64bit/src/tools/scriptglobal.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.h
1050 3221d 05h werner /branches/port_qt5_64bit/src/ interaction wind/bark beetle --- in development  
/branches/port_qt5_64bit/src/abe/fmstand.cpp
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/port_qt5_64bit/src/tools/modules.cpp
1044 3244d 01h werner /branches/port_qt5_64bit/src/ implementing the interaction between bark beetle and wind disturbances;
introduced new flags to mark the reason why trees died when they do die, and a mechanism that allows disturbance modules to being notified when trees die. This involved the creation of a new "DisturbanceInterface".
 
/branches/port_qt5_64bit/src/core/grid.h
/branches/port_qt5_64bit/src/core/management.cpp
/branches/port_qt5_64bit/src/core/management.h
/branches/port_qt5_64bit/src/core/plugin_interface.h
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetleplugin.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetleplugin.h
/branches/port_qt5_64bit/src/plugins/fire/firemodule.cpp
/branches/port_qt5_64bit/src/plugins/wind/windmodule.cpp
/branches/port_qt5_64bit/src/tools/modules.cpp
/branches/port_qt5_64bit/src/tools/modules.h
975 3447d 04h werner /branches/port_qt5_64bit/src/ Fixed a snapshot issue.
Now the water-content and the snow-pack are also stored in the snapshot.
statistics are forced to be re-created.
 
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
/branches/port_qt5_64bit/src/core/watercycle.h
/branches/port_qt5_64bit/src/output/snapshot.cpp
949 3557d 05h werner /branches/port_qt5_64bit/src/core/ changed the sanity check on the HD value of the increment (lower bound was 20 which produced tons of log output).  
/branches/port_qt5_64bit/src/core/tree.cpp
909 3704d 03h werner /branches/port_qt5_64bit/src/ more renaming: now it is hopefully done.  
/branches/port_qt5_64bit/src/abe/abegrid.cpp
/branches/port_qt5_64bit/src/abe/abegrid.h
/branches/port_qt5_64bit/src/abe/amiegrid.cpp
/branches/port_qt5_64bit/src/abe/amiegrid.h
/branches/port_qt5_64bit/src/abe/abe_global.h
/branches/port_qt5_64bit/src/abe/actgeneral.cpp
/branches/port_qt5_64bit/src/abe/activity.cpp
/branches/port_qt5_64bit/src/abe/actplanting.cpp
/branches/port_qt5_64bit/src/abe/actsalvage.cpp
/branches/port_qt5_64bit/src/abe/actscheduled.cpp
/branches/port_qt5_64bit/src/abe/agenttype.cpp
/branches/port_qt5_64bit/src/abe/fmstand.cpp
/branches/port_qt5_64bit/src/abe/fmstp.cpp
/branches/port_qt5_64bit/src/abe/fmtreelist.cpp
/branches/port_qt5_64bit/src/abe/fmunit.cpp
/branches/port_qt5_64bit/src/abe/fomescript.cpp
/branches/port_qt5_64bit/src/abe/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/abe/forestmanagementengine.h
/branches/port_qt5_64bit/src/abe/scheduler.cpp
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/model.h
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/iland/iland.pro
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/iland/tests.cpp
907 3704d 04h werner /branches/port_qt5_64bit/src/ amie -> abe transition  
/branches/port_qt5_64bit/src/abe/actgeneral.cpp
/branches/port_qt5_64bit/src/abe/activity.cpp
/branches/port_qt5_64bit/src/abe/activity.h
/branches/port_qt5_64bit/src/abe/actplanting.cpp
/branches/port_qt5_64bit/src/abe/actplanting.h
/branches/port_qt5_64bit/src/abe/actsalvage.cpp
/branches/port_qt5_64bit/src/abe/actsalvage.h
/branches/port_qt5_64bit/src/abe/actscheduled.cpp
/branches/port_qt5_64bit/src/abe/agenttype.cpp
/branches/port_qt5_64bit/src/abe/agenttype.h
/branches/port_qt5_64bit/src/abe/fmstand.cpp
/branches/port_qt5_64bit/src/abe/fmstand.h
/branches/port_qt5_64bit/src/abe/fmstp.cpp
/branches/port_qt5_64bit/src/abe/fmstp.h
/branches/port_qt5_64bit/src/abe/fmtreelist.cpp
/branches/port_qt5_64bit/src/abe/fmtreelist.h
/branches/port_qt5_64bit/src/abe/fmunit.cpp
/branches/port_qt5_64bit/src/abe/fmunit.h
/branches/port_qt5_64bit/src/abe/fomescript.cpp
/branches/port_qt5_64bit/src/abe/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/abe/forestmanagementengine.h
/branches/port_qt5_64bit/src/abe/scheduler.cpp
/branches/port_qt5_64bit/src/abe/scheduler.h
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/model.h
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/iland/iland.pro

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