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1217 2787d 09h werner / clean up repository - make 1.0 trunk again!  
/iland_regen
/branches/iland_regen
1104 3075d 13h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
/branches/iland_regen
802 3926d 15h werner /branches/port_qt5_64bit/ merge from trunk up to revision 801  
/branches/port_qt5_64bit/R_analysis
/branches/port_qt5_64bit
/branches/port_qt5_64bit/executable/iland.exe
/branches/port_qt5_64bit/src/core/climate.cpp
/branches/port_qt5_64bit/src/core/climate.h
/branches/port_qt5_64bit/src/core/global.h
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/modelcontroller.cpp
/branches/port_qt5_64bit/src/core/modelcontroller.h
/branches/port_qt5_64bit/src/core/production3pg.cpp
/branches/port_qt5_64bit/src/core/sapling.cpp
/branches/port_qt5_64bit/src/core/seeddispersal.cpp
/branches/port_qt5_64bit/src/core/speciesresponse.cpp
/branches/port_qt5_64bit/src/core/speciesresponse.h
/branches/port_qt5_64bit/src/core/speciesset.cpp
/branches/port_qt5_64bit/src/core/speciesset.h
/branches/port_qt5_64bit/src/core/stampcontainer.cpp
/branches/port_qt5_64bit/src/core/watercycle.cpp
/branches/port_qt5_64bit/src/core/watercycle.h
/branches/port_qt5_64bit/src/fonstudio/mainwindow.cpp
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/iland/version.cpp
/branches/port_qt5_64bit/src/output/dynamicstandout.cpp
/branches/port_qt5_64bit/src/output/dynamicstandout.h
/branches/port_qt5_64bit/src/output/productionout.cpp
/branches/port_qt5_64bit/src/output/snapshot.cpp
/branches/port_qt5_64bit/src/output/standdeadout.cpp
/branches/port_qt5_64bit/src/plugins/fire/firemodule.cpp
/branches/port_qt5_64bit/src/plugins/fire/firescript.cpp
/branches/port_qt5_64bit/src/plugins/fire/firescript.h
/branches/port_qt5_64bit/src/plugins/wind/windmodule.cpp
/branches/port_qt5_64bit/src/tools/expression.cpp
/branches/port_qt5_64bit/src/tools/expression.h
/branches/port_qt5_64bit/src/tools/scriptglobal.cpp
779 4059d 09h werner /branches/port_qt5_64bit/  
/branches/port_qt5_64bit
671 4642d 10h werner /trunk/src/ Necessary changes for GPL licence (i.e. headers in all source files)  
/trunk/src/core/climate.cpp
/trunk/src/core/climate.h
/trunk/src/core/environment.cpp
/trunk/src/core/environment.h
/trunk/src/core/establishment.cpp
/trunk/src/core/establishment.h
/trunk/src/core/exception.h
/trunk/src/core/global.h
/trunk/src/core/grid.h
/trunk/src/core/layeredgrid.h
/trunk/src/core/management.cpp
/trunk/src/core/management.h
/trunk/src/core/model.cpp
/trunk/src/core/model.h
/trunk/src/core/modelcontroller.cpp
/trunk/src/core/modelcontroller.h
/trunk/src/core/modelsettings.cpp
/trunk/src/core/modelsettings.h
/trunk/src/core/phenology.cpp
/trunk/src/core/phenology.h
/trunk/src/core/plugin_interface.h
/trunk/src/core/production3pg.cpp
/trunk/src/core/production3pg.h
/trunk/src/core/resourceunit.cpp
/trunk/src/core/resourceunit.h
/trunk/src/core/sapling.cpp
/trunk/src/core/sapling.h
/trunk/src/core/seeddispersal.cpp
/trunk/src/core/seeddispersal.h
/trunk/src/core/snag.cpp
/trunk/src/core/snag.h
/trunk/src/core/soil.cpp
/trunk/src/core/soil.h
/trunk/src/core/species.cpp
/trunk/src/core/species.h
/trunk/src/core/speciesresponse.cpp
/trunk/src/core/speciesresponse.h
/trunk/src/core/speciesset.cpp
/trunk/src/core/speciesset.h
/trunk/src/core/stamp.cpp
/trunk/src/core/stamp.h
/trunk/src/core/stampcontainer.cpp
/trunk/src/core/stampcontainer.h
/trunk/src/core/standloader.cpp
/trunk/src/core/standloader.h
/trunk/src/core/standstatistics.cpp
/trunk/src/core/standstatistics.h
/trunk/src/core/threadrunner.cpp
/trunk/src/core/threadrunner.h
/trunk/src/core/timeevents.cpp
/trunk/src/core/timeevents.h
/trunk/src/core/tree.cpp
/trunk/src/core/tree.h
/trunk/src/core/watercycle.cpp
/trunk/src/core/watercycle.h
/trunk/src/iland/aboutdialog.cpp
/trunk/src/iland/aboutdialog.h
/trunk/src/iland/aboutdialog.ui
/trunk/src/iland/mainwindow.cpp
/trunk/src/iland/mainwindow.h
/trunk/src/iland/paintarea.cpp
/trunk/src/iland/paintarea.h
/trunk/src/iland/stable.h
/trunk/src/iland/tests.cpp
/trunk/src/iland/tests.h
/trunk/src/iland/version.h
/trunk/src/output/carbonflowout.cpp
/trunk/src/output/carbonflowout.h
/trunk/src/output/carbonout.cpp
/trunk/src/output/carbonout.h
/trunk/src/output/dynamicstandout.cpp
/trunk/src/output/dynamicstandout.h
/trunk/src/output/managementout.cpp
/trunk/src/output/managementout.h
/trunk/src/output/output.cpp
/trunk/src/output/output.h
/trunk/src/output/outputmanager.cpp
/trunk/src/output/outputmanager.h
/trunk/src/output/productionout.cpp
/trunk/src/output/productionout.h
/trunk/src/output/saplingout.cpp
/trunk/src/output/saplingout.h
/trunk/src/output/standdeadout.cpp
/trunk/src/output/standdeadout.h
/trunk/src/output/standout.cpp
/trunk/src/output/standout.h
/trunk/src/output/treeout.cpp
/trunk/src/output/treeout.h
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/fire/firemodule.h
/trunk/src/plugins/fire/fireout.cpp
/trunk/src/plugins/fire/fireout.h
/trunk/src/plugins/fire/fireplugin.cpp
/trunk/src/plugins/fire/fireplugin.h
/trunk/src/tools/climateconverter.cpp
/trunk/src/tools/climateconverter.h
/trunk/src/tools/csvfile.cpp
/trunk/src/tools/csvfile.h
/trunk/src/tools/dem.cpp
/trunk/src/tools/dem.h
/trunk/src/tools/expression.cpp
/trunk/src/tools/expression.h
/trunk/src/tools/expressionwrapper.cpp
/trunk/src/tools/expressionwrapper.h
/trunk/src/tools/floatingaverage.cpp
/trunk/src/tools/floatingaverage.h
/trunk/src/tools/gisgrid.cpp
/trunk/src/tools/gisgrid.h
/trunk/src/tools/globalsettings.cpp
/trunk/src/tools/globalsettings.h
/trunk/src/tools/helper.cpp
/trunk/src/tools/helper.h
/trunk/src/tools/mapgrid.cpp
/trunk/src/tools/mapgrid.h
/trunk/src/tools/modules.cpp
/trunk/src/tools/modules.h
/trunk/src/tools/random.cpp
/trunk/src/tools/random.h
/trunk/src/tools/scriptglobal.cpp
/trunk/src/tools/scriptglobal.h
/trunk/src/tools/settingmetadata.cpp
/trunk/src/tools/settingmetadata.h
/trunk/src/tools/sqlhelper.cpp
/trunk/src/tools/sqlhelper.h
/trunk/src/tools/ticktack.cpp
/trunk/src/tools/ticktack.h
/trunk/src/tools/xmlhelper.cpp
/trunk/src/tools/xmlhelper.h
639 4803d 07h werner / move current content to the "trunk"  
/trunk/executable
/trunk/src
/executable
/src
536 4958d 07h werner /src/core/ update the calculation of belowground allocation. Due to a mishap an error was in there (a difference in implementation and concept). In short, the fraction of utilizable and global radiaton was not in the formula.
german info:
Eq. S13: ok, gut das wir da noch einmal gecheckt haben. Sollte so sein wie urspruenglich im Supplement (und auch im Wiki), also mit dem uAPAR/APAR ratio und fN. In fact, wenn die Pflanze Trockenstress hat, sollte mehr in die Wurzeln gehen, das ist die Logik dahinter. Ich nehm mal an das das einiges aendert, wir sollten es aber bereinigen. Kannst es mir ev. im project file als switch anlegen? Dann kann ich den Effekt besser testen. Thx und sorry fuer ev. Unklarheiten in der Kommunikation.

--> ok. da gibt es ein neues setting: "usePARFractionBelowGroundAllocation" (in "model.settings") . Wenn true (das ist auch default), dann wird das so gerechnet wie im paper, mit false ist es die "alte" und falsche variante. Und wahrscheinlich hab ich das versemmelt und irgendwie übersehen - es tut eher mir leid, wenn du jetzt deswegen noch recht viel arbeit hast... sorry.
 
/src/core/modelsettings.cpp
/src/core/modelsettings.h
/src/core/production3pg.cpp
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
485 5013d 11h werner /src/ multithreading-bug during calculation of yearly radiation sum  
/src/core/climate.cpp
/src/core/climate.h
/src/core/production3pg.cpp
/src/core/speciesresponse.h
/src/iland/iland.pro
467 5019d 15h werner /src/core/ added species-parameter "sapReferenceFactor" (for calculation of f_env,yr for sapling growth).  
/src/core/production3pg.cpp
/src/core/species.cpp
/src/core/species.h
/src/core/speciesresponse.h
436 5124d 11h werner /src/ climate: added totalRadiation() function
production3pg.cpp: added the calculation of the f_env,yr (total environmental performance of a species)
 
/src/core/climate.cpp
/src/core/climate.h
/src/core/establishment.cpp
/src/core/phenology.cpp
/src/core/phenology.h
/src/core/production3pg.cpp
/src/core/production3pg.h
/src/core/resourceunit.cpp
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
/src/iland
/src/output/productionout.cpp
369 5196d 15h werner /src/ * multithreading for 3pg production (crashes)
* do 3PG calculation only if this RU has some leafarea of a species (added clear() functions)
* added GUI-accessible speciesindex-variable for trees
 
/src/core/model.cpp
/src/core/production3pg.cpp
/src/core/production3pg.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/speciesresponse.h
/src/core/threadrunner.cpp
/src/tools/expressionwrapper.cpp
367 5196d 16h werner /src/core/ changes in the watercycle.
see http://iland.boku.ac.at/tiki-view_tracker_item.php?itemId=30
the calculation of the effect on the canopy conductance is changed. Now, the combined effects of soil water and vpd response together modify the canopy conductance. In order to do this some structural changes have been necessary. Note: now the response values for vpd and soil water are calculated two times.
 
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.h
/src/core/species.cpp
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
/src/core/watercycle.cpp
/src/core/watercycle.h
328 5327d 08h werner /src/ daily aggregation of responses; looks good now.  
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
/src/core/threadrunner.cpp
/src/iland/tests.cpp
/src/output/productionout.cpp
327 5327d 09h werner /src/ changed mode of radiation calculation  
/src/core/climate.h
/src/core/production3pg.cpp
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
/src/output/productionout.cpp
300 5343d 15h werner /src/ changed CO2 response from yearly to monthly resolution  
/src/core/production3pg.cpp
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
/src/output/productionout.cpp
273 5375d 19h werner /src/ changed the way of aggregating the daily environmental responses. Now, the minimum of the response values for vpd, temperature and soil water is calculated daily and aggregated for each month. the utilizable radiation then is simply rad*avg_min_response. Brief tests showed, that the difference to the "old" multiplicative approach is not very large.  
/src/core/production3pg.cpp
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
/src/output/productionout.cpp
251 5379d 01h werner /src/ Light-Redistribution: Changed again (12.10.2009). LRI of trees are now modified with a modifier based on stockedarea*beerLambert-fraction (pPar). The modified LRI is then used to calculate a light response. The light response * leafarea eventually acts as the share of GPP assigned to a particular tree.  
/src/core/model.cpp
/src/core/production3pg.cpp
/src/core/production3pg.h
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/speciesresponse.h
/src/core/tree.cpp
/src/core/tree.h
/src/output/productionout.cpp
/src/tools/globalsettings.cpp
226 5386d 01h werner /src/core/ working on 3pg, the species specific responses and linking it all together.  
/src/core/climate.cpp
/src/core/climate.h
/src/core/modelsettings.cpp
/src/core/modelsettings.h
/src/core/phenology.cpp
/src/core/phenology.h
/src/core/production3pg.cpp
/src/core/production3pg.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/species.h
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
209 5392d 22h werner /src/ Environmental responses:
VPD, Temperature, CO2, Nitrogen
 
/src/core/climate.cpp
/src/core/climate.h
/src/core/resourceunitspecies.h
/src/core/species.cpp
/src/core/species.h
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
/src/core/speciesset.cpp
/src/core/speciesset.h
/src/iland/mainwindow.cpp
/src/iland/tests.cpp
/src/iland/tests.h
193 5398d 00h werner /src/ started species responses (vpd, etc.) and subsequently the climate database loading stuff.  
/src/core/climate.cpp
/src/core/climate.h
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
/src/core/model.cpp
/src/core/production3pg.h
/src/core/resourceunitspecies.h
/src/iland/iland.pro
/src/iland/mainwindow.cpp
/src/iland/tests.cpp
/src/iland/tests.h
/src/tools/globalsettings.h