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553 4924d 11h werner /src/core/ another variant to calculate 're', following Adair et al 2008. Based on monthly sums of precipitation and PET. PET is calculated during the water cycle, monthly precipitation is summed in the climate object itself.  
552 4924d 13h werner /src/ fixed bug when calculating 're' with the day / dayOfMonth confusion. Changed name of the data field to avoid future problems.  
547 4926d 12h werner /src/core/ restructured the topLayerWaterContent setting; it is now RU-specific (and not a global parameter)  
546 4926d 14h werner /src/core/ modified calculation of 're' (decay rate for snags), and added new model setting ('topLayerWaterContent') for that purpose. New variable 'waterDeficit' per day in WaterCycle.  
541 4951d 11h werner /src/ included new setting "model.settings.decayReferencePsi"  
540 4951d 11h werner /src/ removed the storage of rel. water content in water cycle module; changed the way the climate modifier (re) for snag/soil decay is calculated.
Added the coarse wood of died trees to the 5-year decay pattern of branches (and renamed therefore to otherWood).		  
534 4960d 11h werner /src/ large(r) update of the soil model. Now, the 'kyl' and 'kyr' parameters (i.e. decomposition rates for the litter/wood-soil pool) are now species parameters and calculated dynamically from the litter inputs.  
532 4964d 02h werner /src/ force calculation of 're' in Snag even if no snags are present (Soil needs that value later)  
528 4964d 04h werner /src/ more enabling of C/N cycling in iLand. little GUI-feature: click on a RU in resource-unit visualization now properly shows RU-related debug outputs.  
526 4964d 08h werner /src/ embedding the soil model into iLand. renamed the snag decay debug output.  
525 4964d 09h werner /src/ implemented ICBM/2N soil model (class Soil) and some testing code. So far, the results look promising.  
524 4964d 14h werner /src/ some polishing of the snag dynamics and extending the debug output for that.  
523 4965d 03h werner /src/ some updates to the snag-book-keeping and debug outputs  
522 4965d 07h werner /src/core/ updating the snag-concept (to version 5 from RS)  
490 5013d 15h werner /src/core/ added calculation of the climate indicator "re" used for snag dynamics (decay rate).  
477 5016d 11h werner /src/ testing and refining snag dynamics (esp. debug outputs)  
476 5016d 12h werner /src/ added snag debug output to the gui
corrected calculation of branch biomass in Tree		  
475 5016d 13h werner /src/ * Snag dynamics
debug output "SnagDynamics"
life cycle of Snag objects
include Snag Dynamics in newYear / year end routines

* threadrunner.cpp: parallel execution of species related tasks, e.g. the seed dispersal. In the current form, the ThreadRunner is much nicer:
ThreadRunner runner(mActiveSpecies);
runner.run(func_ptr);		  
468 5021d 11h werner /src/ starting the implementation of the snag dynamics submodule.
New class: Snag
added Snag to ResourceUnitSpecies
added links to Snag in Tree