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720 4623d 17h werner /trunk/src/ fixed a problem when trees died in disturbance and the (unupdated) statistics were used (e.g. the LAI for calculating the water cycle). Now for affected resource units, not only the treelists but also the RU-statistics are updated.
implemented a "radiating" mechanism of border cells. If stand-grid-cells (i.e. 10m height grid resolution) are marked as "outside and forest", then the cells "radiate" some influence on the LIF into the project area. Thus, trees on the edge of the project do *not* have properties of trees standing on a stand edge. Currently, the form/amount of this edge-effect is hard coded.
 
697 4684d 20h werner /trunk/ Doxygen documentation revisited.
After re-establishing doxygen documentation (last update: 2009) a lot of smaller/medium documentation fixes.
Documentation is something that could definitely be always improved ;)
 
671 4727d 23h werner /trunk/src/ Necessary changes for GPL licence (i.e. headers in all source files)  
664 4769d 22h werner /trunk/src/ fixes in the fire module  
662 4770d 23h werner /trunk/src/ continued to work on the fire module. Include the fire severity (i.e. mortality due to fire). This had various other impacts, e.g., on the carbon cycle of saplings.  
639 4888d 21h werner / move current content to the "trunk"  
626 4940d 17h werner /src/core/ added some debug timers plus completed the executable directory (added the sqlite-plugin)  
611 4952d 17h werner / new version fixing some bugs with multi-threading and the case of the full HJA simulation.  
609 4954d 04h werner /src/ implementing CarbonFlow output and book keeping code.  
605 4958d 02h werner /src/ added the "rid" (i.e. a unique id per resource unit) in various debug outputs.
added the "shell" of a new carbonflow output.
 
600 4958d 17h werner /src/ corrected grid export (flipping of y-axis)
added initialization of saplings; StandLoader contains now a routine similar to the one for larger trees to distribute saplings; additionally, a script function (Globals.addSaplingsOnStand()) can be used to use this functionality.
 
591 4985d 23h werner /src/core/ scaled soil inputs to a 1ha size of the soil -> the soil engine always calculates with a full 1ha resource unit.
No additional scaling occures; i.e. outputs from the soil carbon in the Carbon-output need to be re-scaled!
 
575 4989d 01h werner /src/ * renamed toString() from IException to message() (several occurences).
* added a "name" property to the MapGridWrapper
 
574 4989d 04h werner /src/ * modified outputs to write only rows for valid resource units
* dropped setting "woodDecompRate" (snag.cpp)
* calculate the "stockableArea" of a resource unit based on the stand grid
* use the stockableArea for calculation of LAI
 
569 4994d 05h werner /src/ added a "id" for resource units (which comes from initialization grids).
fixed a bug that ru-grids only worked well on second creation of the model.
 
534 5044d 00h werner /src/ large(r) update of the soil model. Now, the 'kyl' and 'kyr' parameters (i.e. decomposition rates for the litter/wood-soil pool) are now species parameters and calculated dynamically from the litter inputs.  
531 5047d 16h werner /src/core/ if dynamic availableNitrogen is enabled, a first value for Nav is calculated during setup (i.e.: one year of soil dynamics without input(!) is simulated). For this, a value of '1.0' for the pre-calculation a value for the climate-modifier 're' is assumed.  
530 5047d 16h werner /src/ enabled the dynamic coupling of available nitrogen from the soil module with the "available nitrogen" (fertility rating) used for calculations of species responses.  
529 5047d 17h werner /src/core/ setup initial values for soil pools (read from XML)  
526 5047d 21h werner /src/ embedding the soil model into iLand. renamed the snag decay debug output.  

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