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662 4773d 11h werner /trunk/src/ continued to work on the fire module. Include the fire severity (i.e. mortality due to fire). This had various other impacts, e.g., on the carbon cycle of saplings.  
639 4891d 08h werner / move current content to the "trunk"  
626 4943d 05h werner /src/core/ added some debug timers plus completed the executable directory (added the sqlite-plugin)  
611 4955d 04h werner / new version fixing some bugs with multi-threading and the case of the full HJA simulation.  
609 4956d 15h werner /src/ implementing CarbonFlow output and book keeping code.  
605 4960d 14h werner /src/ added the "rid" (i.e. a unique id per resource unit) in various debug outputs.
added the "shell" of a new carbonflow output.		  
600 4961d 05h werner /src/ corrected grid export (flipping of y-axis)
added initialization of saplings; StandLoader contains now a routine similar to the one for larger trees to distribute saplings; additionally, a script function (Globals.addSaplingsOnStand()) can be used to use this functionality.		  
591 4988d 11h werner /src/core/ scaled soil inputs to a 1ha size of the soil -> the soil engine always calculates with a full 1ha resource unit.
No additional scaling occures; i.e. outputs from the soil carbon in the Carbon-output need to be re-scaled!		  
575 4991d 13h werner /src/ * renamed toString() from IException to message() (several occurences).
* added a "name" property to the MapGridWrapper		  
574 4991d 16h werner /src/ * modified outputs to write only rows for valid resource units
* dropped setting "woodDecompRate" (snag.cpp)
* calculate the "stockableArea" of a resource unit based on the stand grid
* use the stockableArea for calculation of LAI		  
569 4996d 16h werner /src/ added a "id" for resource units (which comes from initialization grids).
fixed a bug that ru-grids only worked well on second creation of the model.		  
534 5046d 12h werner /src/ large(r) update of the soil model. Now, the 'kyl' and 'kyr' parameters (i.e. decomposition rates for the litter/wood-soil pool) are now species parameters and calculated dynamically from the litter inputs.  
531 5050d 03h werner /src/core/ if dynamic availableNitrogen is enabled, a first value for Nav is calculated during setup (i.e.: one year of soil dynamics without input(!) is simulated). For this, a value of '1.0' for the pre-calculation a value for the climate-modifier 're' is assumed.  
530 5050d 03h werner /src/ enabled the dynamic coupling of available nitrogen from the soil module with the "available nitrogen" (fertility rating) used for calculations of species responses.  
529 5050d 04h werner /src/core/ setup initial values for soil pools (read from XML)  
526 5050d 08h werner /src/ embedding the soil model into iLand. renamed the snag decay debug output.  
521 5051d 12h werner /src/ moved snag dynamics from rus-level to ru-level  
513 5072d 11h werner /src/core/ fixed a nasty bug: if one tree species succeeded to establish on a formerly empty RU, the saplings of other species were killed (well, not directly, but the environment was not recalculated leading to a f_env value of 0).  
503 5081d 09h werner /src/ water cycle: fixed a regression with the calculation of average aging.
added "canopyConductance" as variable for resource units.
added a GUI option to change the current log level.		  
502 5081d 14h werner /src/core/ water cycle for resource units without adult trees; adapted water use for RUs with only few stands by adding "ground cover" up to LAI=1 with default characteristics.  

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