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Rev Age Author Path Log message Diff
1217 2780d 15h werner / clean up repository - make 1.0 trunk again!  
1203 2810d 16h werner /branches/iland_regen/src/ added the missing "ActPlanting" functions for the "new" regeneration module.  
1202 2831d 13h werner /branches/iland_regen/src/ searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation).
 
1196 2901d 12h werner /branches/iland_regen/src/ StandGPP debug output (instead of the missing StandNPP) output  
1184 2921d 18h werner /branches/iland_regen/src/ update JS documentation  
1178 2955d 12h werner /branches/iland_regen/src/ update the seed dispersal kernel: take the density of a point instead the density at a given radius
new option in the GUI to visualize newly created saplings
update of how sapling numbers are calculated and arrive in the output
 
1162 2996d 19h werner /branches/iland_regen/src/ removed the old "mSaplings" from resource unit/model.
Open Issues:
* ActPlanting [init/remove of saplings]
* MapGrid: retrieve list of saplings
* testing of standloader
 
1159 2998d 09h werner /branches/iland_regen/src/ Changed memory layout of regeneration module.
problems now with invalid (NaN) soil values. Needs further analysis ;)
 
1157 2998d 21h werner /branches/iland_regen/ merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch).  
1118 3054d 18h werner /branches/iland_regen/src/core/ fixes for the new saplings, now it almost works as expected.  
1107 3065d 17h werner /branches/iland_regen/src/core/ changed the way the stocked area is calculated for not fully stocked stands. Test case was the YNP simulations of pinus contorta. It was the case that at low stocking levels (e.g. LAI=0.01, 20 trees/ha) too much light was intercepted thus boosting tree growth. We devised a more precise way of calculating stocked area based on tree crowns of individual trees. See also the test conducted for the site.  
1104 3068d 19h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
1040 3320d 13h werner /branches/port_qt5_64bit/src/ working on bark beetle module (continuing on antagonists)
adding species share maps to iLand visualization.
 
1024 3360d 13h werner /branches/port_qt5_64bit/src/ working on the bark beetle module.
now on startup of the model the first year of the climate is loaded automatically.
 
937 3585d 13h werner /branches/port_qt5_64bit/src/ hunting some bugs in summarizing GWL  
936 3586d 13h werner /branches/port_qt5_64bit/src/ searching for bugs in the bookkeeping of increments, volumes.
very cumbersome....
 
895 3727d 19h werner /branches/port_qt5_64bit/src/core/ added "nitrogenDeposition" for dynamic soil calculation.  
824 3885d 19h werner /branches/port_qt5_64bit/src/ fixed *big* regeneration bug. The map with the height of saplings on a resource unit was used in the establishment subroutine although it was *invalid*. Now the establishment and the regeneration are (again?) in one function and use the same valid map.
this removed the strange stripes in the regeneration pattern (there should have been crashes, but weren't). Consequently, the performance debug output was modified.
added better formatting to debugtimer.cpp for large times (in hours, minutes, seconds).
 
779 4052d 14h werner /branches/port_qt5_64bit/  
738 4461d 17h werner /trunk/src/core/ small fixes (memory leaks) due to Valgrind/memcheck session  

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