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1168 2996d 19h werner /branches/iland_regen/src/ working on serotony, establishment etc. updated new establishment module w.r.t. debug outputs.  
/branches/iland_regen/src/core/establishment.cpp
/branches/iland_regen/src/core/establishment.h
/branches/iland_regen/src/core/resourceunitspecies.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/seeddispersal.cpp
/branches/iland_regen/src/core/seeddispersal.h
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/iland/mainwindow.h
/branches/iland_regen/src/iland/mainwindow.ui
/branches/iland_regen/src/tools/globalsettings.cpp
/branches/iland_regen/src/tools/globalsettings.h
1164 3003d 21h werner /branches/iland_regen/src/ found unexpected behavior of irandom(): obviously, it return *never* the upper bound.
eg. irandom(0,3) -> values 0,1, or 2, but never 3.
changed calls to irandom() accordingly.
added also a better random selection of species in the establishment routine
 
/branches/iland_regen/src/abe/scheduler.cpp
/branches/iland_regen/src/core/climate.cpp
/branches/iland_regen/src/core/grid.h
/branches/iland_regen/src/core/management.cpp
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/speciesset.cpp
/branches/iland_regen/src/core/speciesset.h
/branches/iland_regen/src/core/standloader.cpp
/branches/iland_regen/src/core/tree.cpp
/branches/iland_regen/src/iland/tests.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/iland_regen/src/plugins/fire/firemodule.cpp
/branches/iland_regen/src/tools/randomgenerator.h
1162 3004d 03h werner /branches/iland_regen/src/ removed the old "mSaplings" from resource unit/model.
Open Issues:
* ActPlanting [init/remove of saplings]
* MapGrid: retrieve list of saplings
* testing of standloader
 
/branches/iland_regen/src/abe/actplanting.cpp
/branches/iland_regen/src/core/establishment.cpp
/branches/iland_regen/src/core/management.cpp
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/resourceunit.h
/branches/iland_regen/src/core/resourceunitspecies.cpp
/branches/iland_regen/src/core/resourceunitspecies.h
/branches/iland_regen/src/core/sapling.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/species.h
/branches/iland_regen/src/core/standloader.cpp
/branches/iland_regen/src/iland/tests.cpp
/branches/iland_regen/src/output/saplingout.cpp
/branches/iland_regen/src/output/snapshot.cpp
/branches/iland_regen/src/plugins/fire/firemodule.cpp
/branches/iland_regen/src/plugins/wind/windmodule.cpp
/branches/iland_regen/src/tools/mapgrid.cpp
/branches/iland_regen/src/tools/mapgrid.h
1159 3005d 16h werner /branches/iland_regen/src/ Changed memory layout of regeneration module.
problems now with invalid (NaN) soil values. Needs further analysis ;)
 
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/resourceunit.h
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/standloader.cpp
/branches/iland_regen/src/iland/mainwindow.cpp
1158 3005d 22h werner /branches/iland_regen/src/ further performance improvements in regeneration/sapling module.
In total (sim 80 yrs WBT 2km2, from bare ground), iLand is +- 35% faster:
* seed dispersal (not today)
* optimized use of LRI-correction
* better linearization in sapling growth (height growth potential)
 
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/standstatistics.cpp
/branches/iland_regen/src/core/standstatistics.h
/branches/iland_regen/src/iland/tests.cpp
/branches/iland_regen/src/tools/globalsettings.cpp
1157 3006d 05h werner /branches/iland_regen/ merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch).  
/branches/iland_regen/src/output/waterout.cpp
/branches/iland_regen/src/output/waterout.h
/branches/iland_regen
/branches/iland_regen/src/abe/actsalvage.cpp
/branches/iland_regen/src/abe/actsalvage.h
/branches/iland_regen/src/abe/fmstand.cpp
/branches/iland_regen/src/abe/fmstand.h
/branches/iland_regen/src/abe/fmtreelist.cpp
/branches/iland_regen/src/abe/fmunit.cpp
/branches/iland_regen/src/abe/fmunit.h
/branches/iland_regen/src/abe/forestmanagementengine.cpp
/branches/iland_regen/src/abe/forestmanagementengine.h
/branches/iland_regen/src/abe/output/abestandout.cpp
/branches/iland_regen/src/abe/output/abestandremovalout.cpp
/branches/iland_regen/src/abe/scheduler.cpp
/branches/iland_regen/src/abe/scheduler.h
/branches/iland_regen/src/core/climate.h
/branches/iland_regen/src/core/grasscover.h
/branches/iland_regen/src/core/grid.h
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/model.h
/branches/iland_regen/src/core/modelcontroller.cpp
/branches/iland_regen/src/core/production3pg.cpp
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/resourceunit.h
/branches/iland_regen/src/core/resourceunitspecies.cpp
/branches/iland_regen/src/core/sapling.cpp
/branches/iland_regen/src/core/snag.cpp
/branches/iland_regen/src/core/snag.h
/branches/iland_regen/src/core/soil.cpp
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/speciesset.cpp
/branches/iland_regen/src/core/standloader.cpp
/branches/iland_regen/src/core/standstatistics.cpp
/branches/iland_regen/src/core/standstatistics.h
/branches/iland_regen/src/core/threadrunner.cpp
/branches/iland_regen/src/core/threadrunner.h
/branches/iland_regen/src/core/tree.cpp
/branches/iland_regen/src/core/tree.h
/branches/iland_regen/src/core/watercycle.cpp
/branches/iland_regen/src/core/watercycle.h
/branches/iland_regen/src/iland/iland.pro
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/iland/tests.cpp
/branches/iland_regen/src/iland/version.cpp
/branches/iland_regen/src/ilandc/consoleshell.cpp
/branches/iland_regen/src/ilandc/ilandc.pro
/branches/iland_regen/src/output/carbonflowout.cpp
/branches/iland_regen/src/output/carbonflowout.h
/branches/iland_regen/src/output/carbonout.cpp
/branches/iland_regen/src/output/carbonout.h
/branches/iland_regen/src/output/dynamicstandout.cpp
/branches/iland_regen/src/output/landscapeout.cpp
/branches/iland_regen/src/output/managementout.cpp
/branches/iland_regen/src/output/outputmanager.cpp
/branches/iland_regen/src/output/snapshot.cpp
/branches/iland_regen/src/output/standout.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetle.pro
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/iland_regen/src/plugins/barkbeetle/barkbeetleout.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlescript.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlescript.h
/branches/iland_regen/src/plugins/fire/fire.pro
/branches/iland_regen/src/plugins/fire/firemodule.cpp
/branches/iland_regen/src/plugins/wind/wind.pro
/branches/iland_regen/src/plugins/wind/windmodule.cpp
/branches/iland_regen/src/plugins/wind/windmodule.h
/branches/iland_regen/src/plugins/wind/windscript.cpp
/branches/iland_regen/src/plugins/wind/windscript.h
/branches/iland_regen/src/tools/colors.cpp
/branches/iland_regen/src/tools/expressionwrapper.cpp
/branches/iland_regen/src/tools/gisgrid.cpp
/branches/iland_regen/src/tools/gisgrid.h
/branches/iland_regen/src/tools/globalsettings.cpp
/branches/iland_regen/src/tools/globalsettings.h
/branches/iland_regen/src/tools/scriptglobal.cpp
/branches/iland_regen/src/tools/scriptglobal.h
1117 3063d 17h werner /branches/iland_regen/src/ including loading of saplings of snapshots....  
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/iland/iland.pro
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/output/snapshot.cpp
/branches/iland_regen/src/output/snapshot.h
1115 3066d 19h werner /branches/iland_regen/src/ integrating sapling growth, testing  
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/iland/tests.cpp
1111 3067d 19h werner /branches/iland_regen/src/ first draft of the new "establishment"
added the "Saplings", the new container for establishment/sapling growth
some basic functionality is already there...
 
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/establishment.h
/branches/iland_regen/src/core/grid.h
/branches/iland_regen/src/core/management.cpp
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/model.h
/branches/iland_regen/src/core/resourceunitspecies.h
/branches/iland_regen/src/core/sapling.cpp
/branches/iland_regen/src/core/sapling.h
/branches/iland_regen/src/iland/iland.pro
/branches/iland_regen/src/iland/tests.cpp
/branches/iland_regen/src/output/snapshot.cpp
/branches/iland_regen/src/tools/mapgrid.cpp
/branches/iland_regen/src/tools/mapgrid.h
1104 3076d 02h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
/branches/iland_regen
1096 3097d 01h werner /branches/port_qt5_64bit/src/ new version, compiling problems at VSC  
/branches/port_qt5_64bit/src/core/grasscover.cpp
/branches/port_qt5_64bit/src/iland/version.cpp
1081 3157d 19h werner /branches/port_qt5_64bit/src/ created a new javascript wrapper for the iLand "grid" class. This includes some processing (e.g. calculate using expressions), and some function to retrieve grids from iLand (e.g. damage data from disturbance modules, height grid).
fancy!
 
/branches/port_qt5_64bit/src/tools/scriptgrid.cpp
/branches/port_qt5_64bit/src/tools/scriptgrid.h
/branches/port_qt5_64bit/src/core/climate.cpp
/branches/port_qt5_64bit/src/core/modelcontroller.cpp
/branches/port_qt5_64bit/src/iland/iland.pro
/branches/port_qt5_64bit/src/ilandc/consoleshell.cpp
/branches/port_qt5_64bit/src/ilandc/ilandc.pro
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlescript.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlescript.h
/branches/port_qt5_64bit/src/plugins/wind/windmodule.cpp
/branches/port_qt5_64bit/src/plugins/wind/windscript.cpp
/branches/port_qt5_64bit/src/plugins/wind/windscript.h
/branches/port_qt5_64bit/src/tools/scriptglobal.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.h
/branches/port_qt5_64bit/src/tools/spatialanalysis.cpp
1078 3160d 21h werner /branches/port_qt5_64bit/src/iland/ view climate grid cell in visualization of resource units  
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
1076 3167d 21h werner /branches/port_qt5_64bit/src/ avoid loading regeneration if regeneration module is not enabled.  
/branches/port_qt5_64bit/src/iland/mainwindow.ui
/branches/port_qt5_64bit/src/output/snapshot.cpp
1074 3177d 23h werner /branches/port_qt5_64bit/src/ added output for abe-Stand-Details (basal area and basal area share).  
/branches/port_qt5_64bit/src/abe/fmstand.h
/branches/port_qt5_64bit/src/abe/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/abe/output/abestandout.cpp
/branches/port_qt5_64bit/src/abe/output/abestandout.h
/branches/port_qt5_64bit/src/iland/mainwindow.ui
1071 3180d 21h werner /branches/port_qt5_64bit/src/ alternative mortality formulation
COST PROFOUND exercise (H. Bugmann)
 
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.h
1067 3186d 15h werner /branches/port_qt5_64bit/src/ added new efficient grid access functions index2 and index5.
They are >2 times faster than using double conversion to grid coordinates.
 
/branches/port_qt5_64bit/src/core/grid.h
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/iland/tests.cpp
/branches/port_qt5_64bit/src/iland/tests.h
1066 3187d 02h werner /branches/port_qt5_64bit/src/ wind-bark-beetle interaction, now functional
fixed this annoyance of the mixed-up species order in the UI.
 
/branches/port_qt5_64bit/src/core/modelcontroller.cpp
/branches/port_qt5_64bit/src/core/modelcontroller.h
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetleout.cpp
/branches/port_qt5_64bit/src/plugins/wind/windout.cpp
1065 3187d 16h werner /branches/port_qt5_64bit/src/ interaction of bark beetle and wind disturbances.  
/branches/port_qt5_64bit/src/abe/fmstand.cpp
/branches/port_qt5_64bit/src/abe/fomescript.h
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/ilandc/ilandc.pro
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/port_qt5_64bit/src/tools/modules.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.cpp
1064 3188d 21h werner /branches/port_qt5_64bit/src/ many changes. Most notably:
* improvements in the grass-cover sub Modules
* interaction between wind and bark beetle
* javascript function to extract seed-distribution-maps
* fixed a bug when continuous seed input was assumed
 
/branches/port_qt5_64bit/src/abe/fmstand.cpp
/branches/port_qt5_64bit/src/abe/fmstand.h
/branches/port_qt5_64bit/src/abe/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/abe/forestmanagementengine.h
/branches/port_qt5_64bit/src/core/environment.cpp
/branches/port_qt5_64bit/src/core/grasscover.cpp
/branches/port_qt5_64bit/src/core/grasscover.h
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/modelcontroller.h
/branches/port_qt5_64bit/src/core/seeddispersal.cpp
/branches/port_qt5_64bit/src/core/seeddispersal.h
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/port_qt5_64bit/src/tools/scriptglobal.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.h

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