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526 4959d 16h werner /src/ embedding the soil model into iLand. renamed the snag decay debug output.  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/snag.cpp
/src/core/snag.h
/src/core/soil.cpp
/src/core/soil.h
/src/iland/mainwindow.cpp
/src/iland/tests.cpp
/src/tools/globalsettings.cpp
/src/tools/globalsettings.h
521 4960d 21h werner /src/ moved snag dynamics from rus-level to ru-level  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/snag.h
/src/core/tree.cpp
/src/output/dynamicstandout.cpp
/src/tools/globalsettings.cpp
513 4981d 20h werner /src/core/ fixed a nasty bug: if one tree species succeeded to establish on a formerly empty RU, the saplings of other species were killed (well, not directly, but the environment was not recalculated leading to a f_env value of 0).  
/src/core/production3pg.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/tree.cpp
503 4990d 17h werner /src/ water cycle: fixed a regression with the calculation of average aging.
added "canopyConductance" as variable for resource units.
added a GUI option to change the current log level.		  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
/src/iland/mainwindow.cpp
/src/iland/mainwindow.h
/src/iland/mainwindow.ui
/src/tools/expressionwrapper.cpp
502 4990d 23h werner /src/core/ water cycle for resource units without adult trees; adapted water use for RUs with only few stands by adding "ground cover" up to LAI=1 with default characteristics.  
/src/core/resourceunit.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
496 5007d 22h werner /src/core/ changed the behavior of the water-cycle wrt establishment: now the water cycle is executed even if no adult trees are on a resource unit  
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
484 5010d 21h werner /src/ modified release of memory of trees; QVector::resere() does not actually shrink memory; so now "squeeze()" is used.  
/src/core/resourceunit.cpp
/src/core/watercycle.cpp
/src/iland/iland.pro
482 5010d 22h werner /src/core/ fixed bug that recruited trees modified the average aging calculation; added some diagnostic code here and there.  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/tree.cpp
/src/core/watercycle.cpp
475 5011d 21h werner /src/ * Snag dynamics
debug output "SnagDynamics"
life cycle of Snag objects
include Snag Dynamics in newYear / year end routines

* threadrunner.cpp: parallel execution of species related tasks, e.g. the seed dispersal. In the current form, the ThreadRunner is much nicer:
ThreadRunner runner(mActiveSpecies);
runner.run(func_ptr);		  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/snag.cpp
/src/core/snag.h
/src/core/species.h
/src/core/speciesset.cpp
/src/core/threadrunner.cpp
/src/core/threadrunner.h
/src/tools/globalsettings.cpp
/src/tools/globalsettings.h
461 5017d 16h werner /src/core/ fixed a bug in bookkeeping values from saplings per ru (average height/average age). little refactoring and improvement of code that deals with "SaplingMaps".  
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/sapling.cpp
455 5066d 22h werner /src/ changed the layout of the resourceUnitSpecies from a QVector to a QList<ResourceUnitSpecies*>. This seems to be much more appropriate. But caused many small changes throughout the project.  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/watercycle.cpp
/src/iland/mainwindow.cpp
/src/iland/tests.cpp
/src/output/dynamicstandout.cpp
/src/output/managementout.cpp
/src/output/productionout.cpp
/src/output/standdeadout.cpp
/src/output/standout.cpp
454 5066d 23h werner /src/ improvements of regeneration/establishment. Looking for bug that stems obviously from copy-constructor problems (resourceUnitSpecies).  
/src/core/establishment.cpp
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.h
/src/core/sapling.cpp
/src/core/sapling.h
/src/core/species.cpp
/src/core/standstatistics.cpp
/src/core/standstatistics.h
/src/tools/expressionwrapper.cpp
453 5067d 12h werner /src/ sapling growth now in a basic working state. started to implement recruitment. One bug with the "maximum-establishment-height-grid" known.
added also visualization of regeneration layer. Once I have time, I should restructure the drawing/visualization code as it gets quirky (and a paper-concept is available...)		  
/src/core/grid.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/sapling.cpp
/src/core/sapling.h
/src/core/species.cpp
/src/core/species.h
/src/core/standstatistics.cpp
/src/core/standstatistics.h
/src/iland/mainwindow.cpp
/src/iland/mainwindow.h
/src/tools/expressionwrapper.cpp
452 5067d 18h werner /src/ searching for a bug in the sapling growth....  
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/sapling.cpp
/src/core/species.cpp
/src/iland/mainwindow.cpp
/src/iland/mainwindow.ui
451 5067d 20h werner /src/ further development of sapling growth  
/src/core/establishment.cpp
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/sapling.cpp
/src/core/sapling.h
/src/tools/globalsettings.cpp
450 5067d 23h werner /src/core/ implementing sapling growth...  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/sapling.cpp
/src/core/sapling.h
/src/core/species.h
438 5121d 18h werner /src/ new GridRunner class to iterate nicely over grids with different sizes.
establishment.cpp: started to integrate the whole regeneration process (including "lazy" calculation of 3pg (only if necessary)).		  
/src/core/establishment.cpp
/src/core/grid.h
/src/core/model.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/iland/mainwindow.cpp
/src/iland/tests.cpp
/src/iland/tests.h
436 5121d 21h werner /src/ climate: added totalRadiation() function
production3pg.cpp: added the calculation of the f_env,yr (total environmental performance of a species)		  
/src/core/climate.cpp
/src/core/climate.h
/src/core/establishment.cpp
/src/core/phenology.cpp
/src/core/phenology.h
/src/core/production3pg.cpp
/src/core/production3pg.h
/src/core/resourceunit.cpp
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
/src/iland
/src/output/productionout.cpp
431 5146d 13h werner /src/ included the logLevel-Functions at several locations in the source code.
added a option to only display debug messages in the DebugTimer destructor when elapsed time is longer than one millisecond.		  
/src/core/global.h
/src/core/model.cpp
/src/core/modelcontroller.cpp
/src/core/modelsettings.cpp
/src/core/resourceunit.cpp
/src/core/standloader.cpp
/src/core/watercycle.cpp
/src/iland/tests.cpp
/src/tools/globalsettings.cpp
/src/tools/helper.cpp
/src/tools/helper.h
376 5186d 23h werner /src/ calculation of an average value for aging at resource unit level.
added variable 'aging' for resource units.
changed comments.		  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/species.cpp
/src/core/tree.cpp
/src/tools/expression.cpp
/src/tools/expressionwrapper.cpp

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