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697 4601d 17h werner /trunk/ Doxygen documentation revisited.
After re-establishing doxygen documentation (last update: 2009) a lot of smaller/medium documentation fixes.
Documentation is something that could definitely be always improved ;)
 
/trunk/doc
/trunk/doc/iland_doxyfile.doxy
/trunk/src/core/environment.cpp
/trunk/src/core/grid.h
/trunk/src/core/layeredgrid.h
/trunk/src/core/management.cpp
/trunk/src/core/model.cpp
/trunk/src/core/modelcontroller.cpp
/trunk/src/core/phenology.cpp
/trunk/src/core/production3pg.cpp
/trunk/src/core/resourceunit.cpp
/trunk/src/core/resourceunitspecies.cpp
/trunk/src/core/sapling.cpp
/trunk/src/core/seeddispersal.cpp
/trunk/src/core/snag.cpp
/trunk/src/core/soil.cpp
/trunk/src/core/species.cpp
/trunk/src/core/speciesresponse.cpp
/trunk/src/core/speciesset.cpp
/trunk/src/core/stamp.h
/trunk/src/core/stampcontainer.h
/trunk/src/core/standloader.cpp
/trunk/src/core/standstatistics.cpp
/trunk/src/core/tree.cpp
/trunk/src/core/watercycle.cpp
/trunk/src/core/watercycle.h
/trunk/src/iland/maindoc.cpp
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/fire/firemodule.h
/trunk/src/plugins/fire/firescript.cpp
/trunk/src/tools/csvfile.cpp
/trunk/src/tools/dem.h
/trunk/src/tools/expressionwrapper.cpp
/trunk/src/tools/gisgrid.cpp
/trunk/src/tools/mapgrid.cpp
/trunk/src/tools/scriptglobal.cpp
/trunk/src/tools/sqlhelper.cpp
680 4637d 01h werner /trunk/ Version 0.7.1
Several improvements/fixes in the Fire module, inter alia:
* fire size distribution
* handling of burning snags
* improved scripting support (export spread pattern als ESRI grid)
* fix in watercylce for kbdi-calculation
 
/trunk/executable/iland.exe
/trunk/executable/ilandc.exe
/trunk/src/core/grid.h
/trunk/src/core/watercycle.cpp
/trunk/src/iland/version.cpp
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/fire/firemodule.h
/trunk/src/plugins/fire/fireout.cpp
/trunk/src/plugins/fire/firescript.cpp
/trunk/src/plugins/fire/firescript.h
/trunk/src/tools/scriptglobal.cpp
671 4644d 21h werner /trunk/src/ Necessary changes for GPL licence (i.e. headers in all source files)  
/trunk/src/core/climate.cpp
/trunk/src/core/climate.h
/trunk/src/core/environment.cpp
/trunk/src/core/environment.h
/trunk/src/core/establishment.cpp
/trunk/src/core/establishment.h
/trunk/src/core/exception.h
/trunk/src/core/global.h
/trunk/src/core/grid.h
/trunk/src/core/layeredgrid.h
/trunk/src/core/management.cpp
/trunk/src/core/management.h
/trunk/src/core/model.cpp
/trunk/src/core/model.h
/trunk/src/core/modelcontroller.cpp
/trunk/src/core/modelcontroller.h
/trunk/src/core/modelsettings.cpp
/trunk/src/core/modelsettings.h
/trunk/src/core/phenology.cpp
/trunk/src/core/phenology.h
/trunk/src/core/plugin_interface.h
/trunk/src/core/production3pg.cpp
/trunk/src/core/production3pg.h
/trunk/src/core/resourceunit.cpp
/trunk/src/core/resourceunit.h
/trunk/src/core/sapling.cpp
/trunk/src/core/sapling.h
/trunk/src/core/seeddispersal.cpp
/trunk/src/core/seeddispersal.h
/trunk/src/core/snag.cpp
/trunk/src/core/snag.h
/trunk/src/core/soil.cpp
/trunk/src/core/soil.h
/trunk/src/core/species.cpp
/trunk/src/core/species.h
/trunk/src/core/speciesresponse.cpp
/trunk/src/core/speciesresponse.h
/trunk/src/core/speciesset.cpp
/trunk/src/core/speciesset.h
/trunk/src/core/stamp.cpp
/trunk/src/core/stamp.h
/trunk/src/core/stampcontainer.cpp
/trunk/src/core/stampcontainer.h
/trunk/src/core/standloader.cpp
/trunk/src/core/standloader.h
/trunk/src/core/standstatistics.cpp
/trunk/src/core/standstatistics.h
/trunk/src/core/threadrunner.cpp
/trunk/src/core/threadrunner.h
/trunk/src/core/timeevents.cpp
/trunk/src/core/timeevents.h
/trunk/src/core/tree.cpp
/trunk/src/core/tree.h
/trunk/src/core/watercycle.cpp
/trunk/src/core/watercycle.h
/trunk/src/iland/aboutdialog.cpp
/trunk/src/iland/aboutdialog.h
/trunk/src/iland/aboutdialog.ui
/trunk/src/iland/mainwindow.cpp
/trunk/src/iland/mainwindow.h
/trunk/src/iland/paintarea.cpp
/trunk/src/iland/paintarea.h
/trunk/src/iland/stable.h
/trunk/src/iland/tests.cpp
/trunk/src/iland/tests.h
/trunk/src/iland/version.h
/trunk/src/output/carbonflowout.cpp
/trunk/src/output/carbonflowout.h
/trunk/src/output/carbonout.cpp
/trunk/src/output/carbonout.h
/trunk/src/output/dynamicstandout.cpp
/trunk/src/output/dynamicstandout.h
/trunk/src/output/managementout.cpp
/trunk/src/output/managementout.h
/trunk/src/output/output.cpp
/trunk/src/output/output.h
/trunk/src/output/outputmanager.cpp
/trunk/src/output/outputmanager.h
/trunk/src/output/productionout.cpp
/trunk/src/output/productionout.h
/trunk/src/output/saplingout.cpp
/trunk/src/output/saplingout.h
/trunk/src/output/standdeadout.cpp
/trunk/src/output/standdeadout.h
/trunk/src/output/standout.cpp
/trunk/src/output/standout.h
/trunk/src/output/treeout.cpp
/trunk/src/output/treeout.h
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/fire/firemodule.h
/trunk/src/plugins/fire/fireout.cpp
/trunk/src/plugins/fire/fireout.h
/trunk/src/plugins/fire/fireplugin.cpp
/trunk/src/plugins/fire/fireplugin.h
/trunk/src/tools/climateconverter.cpp
/trunk/src/tools/climateconverter.h
/trunk/src/tools/csvfile.cpp
/trunk/src/tools/csvfile.h
/trunk/src/tools/dem.cpp
/trunk/src/tools/dem.h
/trunk/src/tools/expression.cpp
/trunk/src/tools/expression.h
/trunk/src/tools/expressionwrapper.cpp
/trunk/src/tools/expressionwrapper.h
/trunk/src/tools/floatingaverage.cpp
/trunk/src/tools/floatingaverage.h
/trunk/src/tools/gisgrid.cpp
/trunk/src/tools/gisgrid.h
/trunk/src/tools/globalsettings.cpp
/trunk/src/tools/globalsettings.h
/trunk/src/tools/helper.cpp
/trunk/src/tools/helper.h
/trunk/src/tools/mapgrid.cpp
/trunk/src/tools/mapgrid.h
/trunk/src/tools/modules.cpp
/trunk/src/tools/modules.h
/trunk/src/tools/random.cpp
/trunk/src/tools/random.h
/trunk/src/tools/scriptglobal.cpp
/trunk/src/tools/scriptglobal.h
/trunk/src/tools/settingmetadata.cpp
/trunk/src/tools/settingmetadata.h
/trunk/src/tools/sqlhelper.cpp
/trunk/src/tools/sqlhelper.h
/trunk/src/tools/ticktack.cpp
/trunk/src/tools/ticktack.h
/trunk/src/tools/xmlhelper.cpp
/trunk/src/tools/xmlhelper.h
646 4785d 22h werner /trunk/src/ reorganized the fire module code and other stuff.
* added new interfaces and linked some of them already (setup(), ...)
* separated the plugin from the implementation (fireplugin.h vs. FireModule)
* worked on finding a way to create "layeredgrids" (how to avoid the templates...)- i have a solution now but still not sure if it really works
 
/trunk/src/core/layeredgrid.h
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/fire/firemodule.h
/trunk/src/core/grid.h
/trunk/src/core/model.cpp
/trunk/src/core/model.h
/trunk/src/core/modelcontroller.cpp
/trunk/src/core/modelcontroller.h
/trunk/src/core/plugin_interface.h
/trunk/src/core/watercycle.cpp
/trunk/src/iland/iland.pro
/trunk/src/plugins/fire/fire.pro
/trunk/src/plugins/fire/fireplugin.cpp
/trunk/src/plugins/fire/fireplugin.h
/trunk/src/tools/gisgrid.cpp
/trunk/src/tools/gisgrid.h
/trunk/src/tools/modules.cpp
/trunk/src/tools/modules.h
639 4805d 19h werner / move current content to the "trunk"  
/trunk/executable
/trunk/src
/executable
/src
626 4857d 15h werner /src/core/ added some debug timers plus completed the executable directory (added the sqlite-plugin)  
/src/core/establishment.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/speciesresponse.cpp
/src/core/watercycle.cpp
621 4862d 01h werner /src/core/ * removed the temperature dependent calculation of e20 for the evapotranspiration,
* added some options to the project file (snow temperature, interception)
 
/src/core/watercycle.cpp
/src/core/watercycle.h
620 4862d 03h werner /src/core/ Modified canopy evaporation to incorporate Wigmosta et al (switching
from "wet" to "dry" canopy)
 
/src/core/watercycle.cpp
605 4875d 00h werner /src/ added the "rid" (i.e. a unique id per resource unit) in various debug outputs.
added the "shell" of a new carbonflow output.
 
/src/output/carbonflowout.cpp
/src/output/carbonflowout.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/snag.cpp
/src/core/speciesresponse.cpp
/src/core/watercycle.cpp
/src/iland/iland.pro
/src/output/outputmanager.cpp
/src/tools/globalsettings.cpp
572 4908d 23h werner /src/ * be more generous with the names in the header of ESRI-style gis grids (case sensitivity)
* allow subtle difference for the sum of sand/clay/silt (rounding errors)
 
/src/core/watercycle.cpp
/src/tools/gisgrid.cpp
566 4913d 02h werner /src/ extended management: modify carbon content of soil / swd pools.
slightly modifications to the CSVFile JS API (value(row, name)-function).
 
/src/core/management.cpp
/src/core/management.h
/src/core/snag.h
/src/core/soil.cpp
/src/core/soil.h
/src/core/watercycle.cpp
/src/tools/csvfile.h
562 4919d 22h werner /src/ calculate ET0 (reference evapotranspiration) that is used for snag decay 're'. Another version of penman monteith is used for calculation.
See the excel - based "re_decomp.xlsx" for details
 
/src/core/snag.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
/src/iland/tests.cpp
561 4920d 00h werner /src/core/ update of the watercycle:
* changed the calc. of svp-slope (saturated vapor pressure) from homebrewn derivation to FAO code (Allen et al).
* use now "net radiation" instead of global radiation. "net rad" is calculated from a linear estimation with fixed coefficients (source: 3pg)
The results show only very little differences (e.g.: base version: yearly et: 698mm, after updates: 666mm). (see penman-monteith_2011_test.xls)
 
/src/core/watercycle.cpp
554 4924d 22h werner / new version - somewhat intermediate.
contains the *next* version of 're' calculation and seems to have still problems with the PET calculation. This version is solely for testing purposes.
 
/executable/iland.exe
/src/core/watercycle.cpp
/src/core/watercycle.h
/src/iland/version.cpp
553 4924d 22h werner /src/core/ another variant to calculate 're', following Adair et al 2008. Based on monthly sums of precipitation and PET. PET is calculated during the water cycle, monthly precipitation is summed in the climate object itself.  
/src/core/climate.cpp
/src/core/climate.h
/src/core/snag.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
547 4926d 23h werner /src/core/ restructured the topLayerWaterContent setting; it is now RU-specific (and not a global parameter)  
/src/core/modelsettings.cpp
/src/core/modelsettings.h
/src/core/snag.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
546 4927d 01h werner /src/core/ modified calculation of 're' (decay rate for snags), and added new model setting ('topLayerWaterContent') for that purpose. New variable 'waterDeficit' per day in WaterCycle.  
/src/core/modelsettings.cpp
/src/core/modelsettings.h
/src/core/snag.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
540 4951d 22h werner /src/ removed the storage of rel. water content in water cycle module; changed the way the climate modifier (re) for snag/soil decay is calculated.
Added the coarse wood of died trees to the 5-year decay pattern of branches (and renamed therefore to otherWood).
 
/src/core/snag.cpp
/src/core/snag.h
/src/core/watercycle.cpp
/src/core/watercycle.h
/src/tools/globalsettings.cpp
504 4995d 18h werner /src/ New output for "saplings"  
/src/output/saplingout.cpp
/src/output/saplingout.h
/src/core/model.cpp
/src/core/resourceunitspecies.h
/src/core/sapling.cpp
/src/core/sapling.h
/src/core/standstatistics.cpp
/src/core/watercycle.cpp
/src/iland/iland.pro
/src/output/outputmanager.cpp
503 4995d 19h werner /src/ water cycle: fixed a regression with the calculation of average aging.
added "canopyConductance" as variable for resource units.
added a GUI option to change the current log level.
 
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
/src/iland/mainwindow.cpp
/src/iland/mainwindow.h
/src/iland/mainwindow.ui
/src/tools/expressionwrapper.cpp
502 4996d 01h werner /src/core/ water cycle for resource units without adult trees; adapted water use for RUs with only few stands by adding "ground cover" up to LAI=1 with default characteristics.  
/src/core/resourceunit.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
496 5013d 01h werner /src/core/ changed the behavior of the water-cycle wrt establishment: now the water cycle is executed even if no adult trees are on a resource unit  
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
484 5015d 23h werner /src/ modified release of memory of trees; QVector::resere() does not actually shrink memory; so now "squeeze()" is used.  
/src/core/resourceunit.cpp
/src/core/watercycle.cpp
/src/iland/iland.pro
482 5016d 01h werner /src/core/ fixed bug that recruited trees modified the average aging calculation; added some diagnostic code here and there.  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/tree.cpp
/src/core/watercycle.cpp
455 5072d 01h werner /src/ changed the layout of the resourceUnitSpecies from a QVector to a QList<ResourceUnitSpecies*>. This seems to be much more appropriate. But caused many small changes throughout the project.  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/watercycle.cpp
/src/iland/mainwindow.cpp
/src/iland/tests.cpp
/src/output/dynamicstandout.cpp
/src/output/managementout.cpp
/src/output/productionout.cpp
/src/output/standdeadout.cpp
/src/output/standout.cpp
431 5151d 15h werner /src/ included the logLevel-Functions at several locations in the source code.
added a option to only display debug messages in the DebugTimer destructor when elapsed time is longer than one millisecond.
 
/src/core/global.h
/src/core/model.cpp
/src/core/modelcontroller.cpp
/src/core/modelsettings.cpp
/src/core/resourceunit.cpp
/src/core/standloader.cpp
/src/core/watercycle.cpp
/src/iland/tests.cpp
/src/tools/globalsettings.cpp
/src/tools/helper.cpp
/src/tools/helper.h
379 5190d 03h werner /src/core/ included switch to use either field capacity or water saturation for water calculations.  
/src/core/watercycle.cpp
377 5191d 04h werner /src/core/ added aging to g_c calculation (WaterCycle).  
/src/core/standstatistics.h
/src/core/watercycle.cpp
372 5198d 16h werner /src/core/ corrected default value for boundary layer conductance (now 0.2)  
/src/core/modelsettings.cpp
/src/core/watercycle.cpp
368 5199d 03h werner /src/ new model settings: laiThresholdForClosedStand, boundaryLayerConductance.
dropped the "evapotranspirationBGC" and the related model settings
 
/src/core/modelsettings.cpp
/src/core/modelsettings.h
/src/core/watercycle.cpp
/src/core/watercycle.h
/src/tools/globalsettings.cpp
367 5199d 03h werner /src/core/ changes in the watercycle.
see http://iland.boku.ac.at/tiki-view_tracker_item.php?itemId=30
the calculation of the effect on the canopy conductance is changed. Now, the combined effects of soil water and vpd response together modify the canopy conductance. In order to do this some structural changes have been necessary. Note: now the response values for vpd and soil water are calculated two times.
 
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.h
/src/core/species.cpp
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
/src/core/watercycle.cpp
/src/core/watercycle.h
364 5218d 04h werner /src/ added RU-index to water debug output (and an additional check to test for strange water inputs)  
/src/core/watercycle.cpp
/src/tools/globalsettings.cpp
339 5310d 19h werner /src/ sort debug outputs by the first field (usually date).  
/src/core/watercycle.cpp
/src/core/watercycle.h
/src/tools/globalsettings.cpp
338 5310d 21h werner /src/ see tracker #18: fixes in watercycle.cpp
(calc. soil properties, depletion below species specific minimum-water potential)
 
/src/core/watercycle.cpp
/src/core/watercycle.h
/src/tools/globalsettings.cpp
335 5322d 20h werner /src/core/ issues with watercycle: interception from evaporation (see tracker#16)  
/src/core/climate.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
334 5322d 22h werner /src/core/ flow from intercepted water to snow for temps <0°  
/src/core/watercycle.cpp
/src/core/watercycle.h
331 5329d 14h werner / changed order in which statistics are calculated: statistics of species and RUs are now cleared immediately before they are refilled (during the growth of individual trees). Now steps between (e.g. water-cycle) can access valid statistics (that are essentially the state of the end of the last year)  
/executable
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/watercycle.cpp
304 5339d 22h werner /src/core/ changed parameter name psiMax to psiMin (tracker#6)  
/src/core/species.cpp
/src/core/species.h
/src/core/watercycle.cpp
299 5350d 01h werner /src/ fixed bug with disabled debug outputs
added modified LRI to NPP-debug output
new species parameter "probStressYears".
documentation (wiki-links)
 
/src/core/species.cpp
/src/core/standloader.cpp
/src/core/tree.cpp
/src/core/watercycle.cpp
/src/output/treeout.cpp
/src/tools/globalsettings.cpp
281 5374d 09h werner /src/ setup of the world - remodeled the init-routine in Model, changed the init of stands (also some xml-keys). added a storage for variables local to rseource units (e.g. nitrogenAvailable).  
/src/core/environment.cpp
/src/core/environment.h
/src/core/exception.h
/src/core/model.cpp
/src/core/model.h
/src/core/modelsettings.cpp
/src/core/modelsettings.h
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/speciesresponse.cpp
/src/core/standloader.cpp
/src/core/standloader.h
/src/core/watercycle.cpp
/src/iland/tests.cpp