| Rev |
Age |
Author |
Path |
Log message |
Diff |
| 1222 |
2789d 07h |
werner |
/ |
public SVN |
|
| 1221 |
2789d 07h |
werner |
/branches/ |
public SVN |
|
| 1220 |
2789d 08h |
werner |
/branches/version1.0/ |
Version 1.0 |
|
| 1218 |
2789d 10h |
werner |
/ |
clean up repository - make 1.0 trunk again! |
|
| 1217 |
2789d 10h |
werner |
/ |
clean up repository - make 1.0 trunk again! |
|
| 1202 |
2840d 08h |
werner |
/branches/iland_regen/src/ |
searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation). |
|
| 1160 |
3006d 07h |
werner |
/branches/iland_regen/src/core/ |
bug-fixes of the new establishment module (carbon)
first part of the YNP water limitation in establishment. |
|
| 1157 |
3007d 16h |
werner |
/branches/iland_regen/ |
merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch). |
|
| 1104 |
3077d 14h |
werner |
/branches/iland_regen/ |
Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone |
|
| 1088 |
3146d 08h |
werner |
/branches/port_qt5_64bit/src/ |
salavage management bark beetle damages
some fixes w.r.t. the correct extent of grids.
added "year" as stand varaible (abe). |
|
| 925 |
3664d 08h |
werner |
/branches/port_qt5_64bit/src/core/ |
calculate 're' also when snags are empty (to avoid errors when snags are not properly initialized) |
|
| 779 |
4061d 09h |
werner |
/branches/port_qt5_64bit/ |
|
|
| 771 |
4191d 14h |
werner |
/trunk/src/core/ |
mini-change: calculate climate fators really only when snag is non-empty (see previous commit) |
|
| 770 |
4191d 14h |
werner |
/trunk/src/ |
fixed a bug with deadwood decay: (see analysis/extseeds/analyse_total_carbon20130113.docx). For a RU without vegetation (trees/saplings) the water cycle was not calculated -> therefore no values for evapotranspiration were available -> the climate factors for the deadwood decay were only driven by temperature (not by humidity) -> only a very slow decay until a RU got populated. Ouch.
now the water cycle is calculated for every resource unit with non-empty snags (either flux or state non-zero) |
|
| 713 |
4554d 14h |
werner |
/trunk/src/ |
implemented a way to split the biomass of a dead tree into several pathways (i.e. to soil, to snags, to atmosphere/removal). |
|
| 697 |
4601d 06h |
werner |
/trunk/ |
Doxygen documentation revisited.
After re-establishing doxygen documentation (last update: 2009) a lot of smaller/medium documentation fixes.
Documentation is something that could definitely be always improved ;) |
|
| 671 |
4644d 10h |
werner |
/trunk/src/ |
Necessary changes for GPL licence (i.e. headers in all source files) |
|
| 639 |
4805d 07h |
werner |
/ |
move current content to the "trunk" |
|
| 609 |
4870d 14h |
werner |
/src/ |
implementing CarbonFlow output and book keeping code. |
|
| 607 |
4871d 07h |
werner |
/src/core/ |
smaller fixes:
* error when exporting ESRI files
* a new JS function "slashSnags()" for managing standing dead trees
* handling of newly burnt tree when removing carbon due to a fire event |
|
| 605 |
4874d 13h |
werner |
/src/ |
added the "rid" (i.e. a unique id per resource unit) in various debug outputs.
added the "shell" of a new carbonflow output. |
|
| 595 |
4888d 16h |
werner |
/src/core/ |
changed behavior of coarse roots: if biomass exceeds value from allometric relation, the excell biomass is pushed to the soil (avoid piling up of coarse root carbon in the soil)
inlined some biomass functions in species.h. |
|
| 588 |
4902d 14h |
werner |
/src/core/ |
added carbon-bookkeeping in the regeneration layer. |
|
| 587 |
4903d 04h |
werner |
/src/ |
added carbon output.
lots of changes necessary to get this done (especially budgeting of biomass pools) |
|
| 574 |
4905d 15h |
werner |
/src/ |
* modified outputs to write only rows for valid resource units
* dropped setting "woodDecompRate" (snag.cpp)
* calculate the "stockableArea" of a resource unit based on the stand grid
* use the stockableArea for calculation of LAI |
|
| 564 |
4916d 07h |
werner |
/src/ |
Improvements of the Management API and functionality.
new functionality:
* killSaplings() -> use a "MapGrid" and remove small trees specifically
* properties defining biomass remove fractions during management
Now the tree list of the management object is cleaned up after a management, i.e. successive managements without reloading the tree list are possible. |
|
| 562 |
4919d 10h |
werner |
/src/ |
calculate ET0 (reference evapotranspiration) that is used for snag decay 're'. Another version of penman monteith is used for calculation.
See the excel - based "re_decomp.xlsx" for details |
|
| 557 |
4923d 07h |
werner |
/src/ |
added initialization of snags and some new resource unit variables.
Example: model.initialization node:
<snags>
<swdC>12000</swdC>
<swdCN>120</swdCN>
<swdCount>50</swdCount>
<otherC>4000</otherC>
<otherCN>30</otherCN>
<swdDecompRate>0.05</swdDecompRate>
<woodDecompRate>0.05</woodDecompRate>
<swdHalfLife>30</swdHalfLife>
</snags> |
|
| 553 |
4924d 11h |
werner |
/src/core/ |
another variant to calculate 're', following Adair et al 2008. Based on monthly sums of precipitation and PET. PET is calculated during the water cycle, monthly precipitation is summed in the climate object itself. |
|
| 552 |
4924d 13h |
werner |
/src/ |
fixed bug when calculating 're' with the day / dayOfMonth confusion. Changed name of the data field to avoid future problems. |
|
| 547 |
4926d 12h |
werner |
/src/core/ |
restructured the topLayerWaterContent setting; it is now RU-specific (and not a global parameter) |
|
| 546 |
4926d 14h |
werner |
/src/core/ |
modified calculation of 're' (decay rate for snags), and added new model setting ('topLayerWaterContent') for that purpose. New variable 'waterDeficit' per day in WaterCycle. |
|
| 541 |
4951d 11h |
werner |
/src/ |
included new setting "model.settings.decayReferencePsi" |
|
| 540 |
4951d 11h |
werner |
/src/ |
removed the storage of rel. water content in water cycle module; changed the way the climate modifier (re) for snag/soil decay is calculated.
Added the coarse wood of died trees to the 5-year decay pattern of branches (and renamed therefore to otherWood). |
|
| 534 |
4960d 11h |
werner |
/src/ |
large(r) update of the soil model. Now, the 'kyl' and 'kyr' parameters (i.e. decomposition rates for the litter/wood-soil pool) are now species parameters and calculated dynamically from the litter inputs. |
|
| 532 |
4964d 02h |
werner |
/src/ |
force calculation of 're' in Snag even if no snags are present (Soil needs that value later) |
|
| 528 |
4964d 03h |
werner |
/src/ |
more enabling of C/N cycling in iLand. little GUI-feature: click on a RU in resource-unit visualization now properly shows RU-related debug outputs. |
|
| 526 |
4964d 07h |
werner |
/src/ |
embedding the soil model into iLand. renamed the snag decay debug output. |
|
| 525 |
4964d 08h |
werner |
/src/ |
implemented ICBM/2N soil model (class Soil) and some testing code. So far, the results look promising. |
|
| 524 |
4964d 14h |
werner |
/src/ |
some polishing of the snag dynamics and extending the debug output for that. |
|