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1222 2872d 18h werner / public SVN  
/tags/release_1.0
/branches/release_1.0
1221 2872d 18h werner /branches/ public SVN  
/branches/release_1.0
/branches/version1.0
1220 2872d 18h werner /branches/version1.0/ Version 1.0  
/branches/version1.0
1218 2872d 20h werner / clean up repository - make 1.0 trunk again!  
/trunk
/iland_regen
1217 2872d 20h werner / clean up repository - make 1.0 trunk again!  
/iland_regen
/branches/iland_regen
1180 3040d 17h werner /branches/iland_regen/src/ major rewrite of the seed distribution module:
* dispersal kernels fixed (using seeds per area, and not per radius)
* seed production now depends on leaf area of species (on source pixels)
* distribution for all source pixels (skipped the shortcut via continuously covered forest)
* probability of establishment calculated as function of available seedlings (sum of all incoming seedlings)
still testing ;)
more automation functions (e.g. to call OS commands, additional JS event handlers)
 
/branches/iland_regen/src/core/modelcontroller.cpp
/branches/iland_regen/src/core/seeddispersal.cpp
/branches/iland_regen/src/core/seeddispersal.h
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/species.h
/branches/iland_regen/src/core/tree.cpp
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/tools/scriptglobal.cpp
/branches/iland_regen/src/tools/scriptglobal.h
1178 3047d 17h werner /branches/iland_regen/src/ update the seed dispersal kernel: take the density of a point instead the density at a given radius
new option in the GUI to visualize newly created saplings
update of how sapling numbers are calculated and arrive in the output
 
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/seeddispersal.cpp
/branches/iland_regen/src/core/seeddispersal.h
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/iland/mainwindow.ui
1176 3052d 18h werner /branches/iland_regen/src/core/ developing the long distance dispersal functionality;
looks as if we have a conceptual problem with how we use the seed kernel functions...
more to come...
 
/branches/iland_regen/src/core/establishment.cpp
/branches/iland_regen/src/core/establishment.h
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/seeddispersal.cpp
/branches/iland_regen/src/core/seeddispersal.h
1168 3081d 17h werner /branches/iland_regen/src/ working on serotony, establishment etc. updated new establishment module w.r.t. debug outputs.  
/branches/iland_regen/src/core/establishment.cpp
/branches/iland_regen/src/core/establishment.h
/branches/iland_regen/src/core/resourceunitspecies.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/seeddispersal.cpp
/branches/iland_regen/src/core/seeddispersal.h
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/iland/mainwindow.h
/branches/iland_regen/src/iland/mainwindow.ui
/branches/iland_regen/src/tools/globalsettings.cpp
/branches/iland_regen/src/tools/globalsettings.h
1167 3082d 02h werner /branches/iland_regen/ merged serotiny from trunk  
/branches/iland_regen
/branches/iland_regen/src/core/seeddispersal.cpp
/branches/iland_regen/src/core/seeddispersal.h
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/species.h
/branches/iland_regen/src/plugins/fire/firemodule.cpp
1104 3161d 00h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
/branches/iland_regen
1102 3161d 13h werner /branches/port_qt5_64bit/src/ fixed couple of clang warnings.

some debugging/profiling work w.r.t. establishment/regen.
 
/branches/port_qt5_64bit/src/core/establishment.cpp
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/seeddispersal.cpp
/branches/port_qt5_64bit/src/core/seeddispersal.h
/branches/port_qt5_64bit/src/core/soil.cpp
/branches/port_qt5_64bit/src/core/stamp.cpp
/branches/port_qt5_64bit/src/core/stampcontainer.cpp
/branches/port_qt5_64bit/src/core/standloader.cpp
/branches/port_qt5_64bit/src/core/standstatistics.cpp
/branches/port_qt5_64bit/src/core/timeevents.cpp
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
/branches/port_qt5_64bit/src/output/outputmanager.cpp
/branches/port_qt5_64bit/src/output/treeout.cpp
/branches/port_qt5_64bit/src/output/treeout.h
/branches/port_qt5_64bit/src/tools/xmlhelper.cpp
/branches/port_qt5_64bit/src/tools/xmlhelper.h
1064 3273d 18h werner /branches/port_qt5_64bit/src/ many changes. Most notably:
* improvements in the grass-cover sub Modules
* interaction between wind and bark beetle
* javascript function to extract seed-distribution-maps
* fixed a bug when continuous seed input was assumed
 
/branches/port_qt5_64bit/src/abe/fmstand.cpp
/branches/port_qt5_64bit/src/abe/fmstand.h
/branches/port_qt5_64bit/src/abe/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/abe/forestmanagementengine.h
/branches/port_qt5_64bit/src/core/environment.cpp
/branches/port_qt5_64bit/src/core/grasscover.cpp
/branches/port_qt5_64bit/src/core/grasscover.h
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/modelcontroller.h
/branches/port_qt5_64bit/src/core/seeddispersal.cpp
/branches/port_qt5_64bit/src/core/seeddispersal.h
/branches/port_qt5_64bit/src/core/tree.cpp
/branches/port_qt5_64bit/src/core/tree.h
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/port_qt5_64bit/src/tools/scriptglobal.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.h
836 3973d 17h werner /branches/port_qt5_64bit/src/core/ implementing external seed on the full project area.  
/branches/port_qt5_64bit/src/core/seeddispersal.cpp
/branches/port_qt5_64bit/src/core/seeddispersal.h
779 4144d 19h werner /branches/port_qt5_64bit/  
/branches/port_qt5_64bit
764 4334d 15h werner /trunk/src/ implementation of advanced external seed input. Around the project area a "seed belt" is lain. The simulated rectangle is split into sectors which can have a different species composition. At the beginning of the simulation, the external seed maps are populated and then reused each year.  
/trunk/src/core/grid.h
/trunk/src/core/seeddispersal.cpp
/trunk/src/core/seeddispersal.h
/trunk/src/core/speciesset.cpp
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/wind/windmodule.cpp
704 4679d 17h werner /trunk/ Speed-Patch!
fixing the missing "&" in the const Grid<float> seedMap() const { return mSeedMap; } ///< access to the seedMap
function. This dramatically improves the performance of the model. Lots of time was lost in duplicating the seedmaps for each species * resourceunit.
in addition: limited max-size of the logging QPlainTextEdit; this could maybe stop iLand from crashing....
 
/trunk/executable/iland.exe
/trunk/src/core/seeddispersal.h
/trunk/src/iland/iland.pro
/trunk/src/iland/mainwindow.cpp
/trunk/src/iland/version.cpp
/trunk/src/ilandc/consoleshell.cpp
/trunk/src/ilandc/ilandc.pro
671 4727d 20h werner /trunk/src/ Necessary changes for GPL licence (i.e. headers in all source files)  
/trunk/src/core/climate.cpp
/trunk/src/core/climate.h
/trunk/src/core/environment.cpp
/trunk/src/core/environment.h
/trunk/src/core/establishment.cpp
/trunk/src/core/establishment.h
/trunk/src/core/exception.h
/trunk/src/core/global.h
/trunk/src/core/grid.h
/trunk/src/core/layeredgrid.h
/trunk/src/core/management.cpp
/trunk/src/core/management.h
/trunk/src/core/model.cpp
/trunk/src/core/model.h
/trunk/src/core/modelcontroller.cpp
/trunk/src/core/modelcontroller.h
/trunk/src/core/modelsettings.cpp
/trunk/src/core/modelsettings.h
/trunk/src/core/phenology.cpp
/trunk/src/core/phenology.h
/trunk/src/core/plugin_interface.h
/trunk/src/core/production3pg.cpp
/trunk/src/core/production3pg.h
/trunk/src/core/resourceunit.cpp
/trunk/src/core/resourceunit.h
/trunk/src/core/sapling.cpp
/trunk/src/core/sapling.h
/trunk/src/core/seeddispersal.cpp
/trunk/src/core/seeddispersal.h
/trunk/src/core/snag.cpp
/trunk/src/core/snag.h
/trunk/src/core/soil.cpp
/trunk/src/core/soil.h
/trunk/src/core/species.cpp
/trunk/src/core/species.h
/trunk/src/core/speciesresponse.cpp
/trunk/src/core/speciesresponse.h
/trunk/src/core/speciesset.cpp
/trunk/src/core/speciesset.h
/trunk/src/core/stamp.cpp
/trunk/src/core/stamp.h
/trunk/src/core/stampcontainer.cpp
/trunk/src/core/stampcontainer.h
/trunk/src/core/standloader.cpp
/trunk/src/core/standloader.h
/trunk/src/core/standstatistics.cpp
/trunk/src/core/standstatistics.h
/trunk/src/core/threadrunner.cpp
/trunk/src/core/threadrunner.h
/trunk/src/core/timeevents.cpp
/trunk/src/core/timeevents.h
/trunk/src/core/tree.cpp
/trunk/src/core/tree.h
/trunk/src/core/watercycle.cpp
/trunk/src/core/watercycle.h
/trunk/src/iland/aboutdialog.cpp
/trunk/src/iland/aboutdialog.h
/trunk/src/iland/aboutdialog.ui
/trunk/src/iland/mainwindow.cpp
/trunk/src/iland/mainwindow.h
/trunk/src/iland/paintarea.cpp
/trunk/src/iland/paintarea.h
/trunk/src/iland/stable.h
/trunk/src/iland/tests.cpp
/trunk/src/iland/tests.h
/trunk/src/iland/version.h
/trunk/src/output/carbonflowout.cpp
/trunk/src/output/carbonflowout.h
/trunk/src/output/carbonout.cpp
/trunk/src/output/carbonout.h
/trunk/src/output/dynamicstandout.cpp
/trunk/src/output/dynamicstandout.h
/trunk/src/output/managementout.cpp
/trunk/src/output/managementout.h
/trunk/src/output/output.cpp
/trunk/src/output/output.h
/trunk/src/output/outputmanager.cpp
/trunk/src/output/outputmanager.h
/trunk/src/output/productionout.cpp
/trunk/src/output/productionout.h
/trunk/src/output/saplingout.cpp
/trunk/src/output/saplingout.h
/trunk/src/output/standdeadout.cpp
/trunk/src/output/standdeadout.h
/trunk/src/output/standout.cpp
/trunk/src/output/standout.h
/trunk/src/output/treeout.cpp
/trunk/src/output/treeout.h
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/fire/firemodule.h
/trunk/src/plugins/fire/fireout.cpp
/trunk/src/plugins/fire/fireout.h
/trunk/src/plugins/fire/fireplugin.cpp
/trunk/src/plugins/fire/fireplugin.h
/trunk/src/tools/climateconverter.cpp
/trunk/src/tools/climateconverter.h
/trunk/src/tools/csvfile.cpp
/trunk/src/tools/csvfile.h
/trunk/src/tools/dem.cpp
/trunk/src/tools/dem.h
/trunk/src/tools/expression.cpp
/trunk/src/tools/expression.h
/trunk/src/tools/expressionwrapper.cpp
/trunk/src/tools/expressionwrapper.h
/trunk/src/tools/floatingaverage.cpp
/trunk/src/tools/floatingaverage.h
/trunk/src/tools/gisgrid.cpp
/trunk/src/tools/gisgrid.h
/trunk/src/tools/globalsettings.cpp
/trunk/src/tools/globalsettings.h
/trunk/src/tools/helper.cpp
/trunk/src/tools/helper.h
/trunk/src/tools/mapgrid.cpp
/trunk/src/tools/mapgrid.h
/trunk/src/tools/modules.cpp
/trunk/src/tools/modules.h
/trunk/src/tools/random.cpp
/trunk/src/tools/random.h
/trunk/src/tools/scriptglobal.cpp
/trunk/src/tools/scriptglobal.h
/trunk/src/tools/settingmetadata.cpp
/trunk/src/tools/settingmetadata.h
/trunk/src/tools/sqlhelper.cpp
/trunk/src/tools/sqlhelper.h
/trunk/src/tools/ticktack.cpp
/trunk/src/tools/ticktack.h
/trunk/src/tools/xmlhelper.cpp
/trunk/src/tools/xmlhelper.h
639 4888d 18h werner / move current content to the "trunk"  
/trunk/executable
/trunk/src
/executable
/src
619 4945d 02h werner /src/core/ Performance improvements for establishments: I try to decide for a resource-unit (random number) if establishment can happen on that RU; this reduces runtime of establishment sub routine by 60% (total runtime -20%); however, it changes also the behavior...  
/src/core/establishment.cpp
/src/core/seeddispersal.cpp
/src/core/seeddispersal.h
491 5097d 01h werner /src/core/ added some additional options for specifying external seed input. Now one can define cardinal directions for seed input as well as the distance of external seed source cells from the stand edge.  
/src/core/seeddispersal.cpp
/src/core/seeddispersal.h
472 5104d 01h werner /src/core/ external seed input, added switch to enable/disable image creation of seedmaps/seed kernels during model runs  
/src/core/seeddispersal.cpp
/src/core/seeddispersal.h
459 5105d 18h werner /src/core/ fixed a bug with wrong alignment of tree positions to seedMap. Detected by Ruperts sharp eye...  
/src/core/seeddispersal.cpp
/src/core/seeddispersal.h
445 5205d 02h werner /src/core/ added database species parameters for seed dispersal, fixed a bug with random generator in StandLoader, change maturity criterion for seed production to age instead of height.  
/src/core/seeddispersal.cpp
/src/core/seeddispersal.h
/src/core/species.cpp
/src/core/species.h
/src/core/standloader.cpp
/src/core/tree.cpp
415 5237d 23h werner /src/core/ seed dispersal:
* defining synchronized seed years for each species
* use different seed kernels depending on seed year state
* create two kernels for each species (1x seed year, 1 x non-seed-year)
* newYear() function also for each Species
 
/src/core/seeddispersal.cpp
/src/core/seeddispersal.h
/src/core/species.cpp
/src/core/species.h
/src/core/speciesset.cpp
391 5264d 21h werner /src/ a rather large update mainly in course of the implementation of seed dispersal.
* integrating the seed dispersal within the model logic
(new function e.g. SpeciesSet::newYear() or SpeciesSet::regeneration()).
* SeedDispersal: implementation of the Seed-Kernel a la TreeMig (see the R-Script on dispersal by Rupert)
Additionally:
new functions (sum(), multiply() for the Grid-template.
 
/src/core/grid.h
/src/core/model.cpp
/src/core/modelsettings.h
/src/core/seeddispersal.cpp
/src/core/seeddispersal.h
/src/core/species.cpp
/src/core/species.h
/src/core/speciesset.cpp
/src/core/speciesset.h
/src/iland/mainwindow.cpp
387 5265d 15h werner /src/ integrating seed dispersal into the model
moved global constants for grid sizes into globalsettings.h
 
/src/core/model.cpp
/src/core/seeddispersal.cpp
/src/core/seeddispersal.h
/src/core/species.cpp
/src/core/species.h
/src/core/speciesset.cpp
/src/core/speciesset.h
/src/core/tree.cpp
/src/tools/globalsettings.h
375 5281d 01h werner /src/ corrected seeddispersal algorithm (I tested with a real image (i.e. photo): errors are then quite clear)
grid::loadFromImage(): automatically setup grid if empty
 
/src/core/grid.cpp
/src/core/seeddispersal.cpp
/src/core/seeddispersal.h
/src/iland/tests.cpp
373 5281d 03h werner /src/ Creation of seeddispersal.
this includes some extensions to the grid (e.g. randomPosition()).
The seedDispersal-algorithm is implemented on CPU (but still not linked to tree growth)
 
/src/core/seeddispersal.cpp
/src/core/seeddispersal.h
/src/core/grid.cpp
/src/core/grid.h
/src/iland/iland.pro
/src/iland/tests.cpp
/src/iland/tests.h