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863 3849d 17h werner /branches/port_qt5_64bit/ renaming of the FOME to AMIE.
unfortunately, some partial merge of changes in Qt4-branch.
 
/branches/port_qt5_64bit/src/amie
/branches/port_qt5_64bit/src/fome
/branches/port_qt5_64bit
/branches/port_qt5_64bit/src/amie/fmunit.h
/branches/port_qt5_64bit/src/amie/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/core/establishment.cpp
/branches/port_qt5_64bit/src/core/model.h
/branches/port_qt5_64bit/src/core/resourceunit.h
/branches/port_qt5_64bit/src/core/resourceunitspecies.cpp
/branches/port_qt5_64bit/src/core/resourceunitspecies.h
/branches/port_qt5_64bit/src/core/sapling.cpp
/branches/port_qt5_64bit/src/core/standstatistics.cpp
/branches/port_qt5_64bit/src/core/standstatistics.h
/branches/port_qt5_64bit/src/iland/iland.pro
/branches/port_qt5_64bit/src/tools/globalsettings.cpp
/branches/port_qt5_64bit/src/tools/mapgrid.h
808 3904d 14h werner /branches/port_qt5_64bit/src/ implementing FOME.
* splitting "helper.cpp" into several files (debugtimer.h, statdata.h, viewport.h) (and changing lots of includes)
* implementing setup of activities (extracting from Javascript)
 
/branches/port_qt5_64bit/src/tools/debugtimer.cpp
/branches/port_qt5_64bit/src/tools/debugtimer.h
/branches/port_qt5_64bit/src/tools/statdata.cpp
/branches/port_qt5_64bit/src/tools/statdata.h
/branches/port_qt5_64bit/src/tools/viewport.cpp
/branches/port_qt5_64bit/src/tools/viewport.h
/branches/port_qt5_64bit/src/core/environment.cpp
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/modelcontroller.cpp
/branches/port_qt5_64bit/src/core/resourceunitspecies.cpp
/branches/port_qt5_64bit/src/core/seeddispersal.cpp
/branches/port_qt5_64bit/src/core/speciesresponse.cpp
/branches/port_qt5_64bit/src/core/watercycle.cpp
/branches/port_qt5_64bit/src/fome/activity.cpp
/branches/port_qt5_64bit/src/fome/activity.h
/branches/port_qt5_64bit/src/fome/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/fome/forestmanagementengine.h
/branches/port_qt5_64bit/src/fome/knowledgebase.cpp
/branches/port_qt5_64bit/src/fome/knowledgebase.h
/branches/port_qt5_64bit/src/iland/iland.pro
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/iland/mainwindow.h
/branches/port_qt5_64bit/src/iland/mainwindow.ui
/branches/port_qt5_64bit/src/iland/tests.cpp
/branches/port_qt5_64bit/src/iland/tests.h
/branches/port_qt5_64bit/src/output/dynamicstandout.cpp
/branches/port_qt5_64bit/src/output/outputmanager.cpp
/branches/port_qt5_64bit/src/output/productionout.cpp
/branches/port_qt5_64bit/src/output/snapshot.cpp
/branches/port_qt5_64bit/src/output/treeout.cpp
/branches/port_qt5_64bit/src/plugins/wind/windmodule.cpp
/branches/port_qt5_64bit/src/tools/helper.cpp
/branches/port_qt5_64bit/src/tools/helper.h
/branches/port_qt5_64bit/src/tools/modules.cpp
/branches/port_qt5_64bit/src/tools/scriptglobal.cpp
779 4056d 17h werner /branches/port_qt5_64bit/  
/branches/port_qt5_64bit
697 4596d 15h werner /trunk/ Doxygen documentation revisited.
After re-establishing doxygen documentation (last update: 2009) a lot of smaller/medium documentation fixes.
Documentation is something that could definitely be always improved ;)
 
/trunk/doc
/trunk/doc/iland_doxyfile.doxy
/trunk/src/core/environment.cpp
/trunk/src/core/grid.h
/trunk/src/core/layeredgrid.h
/trunk/src/core/management.cpp
/trunk/src/core/model.cpp
/trunk/src/core/modelcontroller.cpp
/trunk/src/core/phenology.cpp
/trunk/src/core/production3pg.cpp
/trunk/src/core/resourceunit.cpp
/trunk/src/core/resourceunitspecies.cpp
/trunk/src/core/sapling.cpp
/trunk/src/core/seeddispersal.cpp
/trunk/src/core/snag.cpp
/trunk/src/core/soil.cpp
/trunk/src/core/species.cpp
/trunk/src/core/speciesresponse.cpp
/trunk/src/core/speciesset.cpp
/trunk/src/core/stamp.h
/trunk/src/core/stampcontainer.h
/trunk/src/core/standloader.cpp
/trunk/src/core/standstatistics.cpp
/trunk/src/core/tree.cpp
/trunk/src/core/watercycle.cpp
/trunk/src/core/watercycle.h
/trunk/src/iland/maindoc.cpp
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/fire/firemodule.h
/trunk/src/plugins/fire/firescript.cpp
/trunk/src/tools/csvfile.cpp
/trunk/src/tools/dem.h
/trunk/src/tools/expressionwrapper.cpp
/trunk/src/tools/gisgrid.cpp
/trunk/src/tools/mapgrid.cpp
/trunk/src/tools/scriptglobal.cpp
/trunk/src/tools/sqlhelper.cpp
639 4800d 16h werner / move current content to the "trunk"  
/trunk/executable
/trunk/src
/executable
/src
626 4852d 12h werner /src/core/ added some debug timers plus completed the executable directory (added the sqlite-plugin)  
/src/core/establishment.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/speciesresponse.cpp
/src/core/watercycle.cpp
605 4869d 21h werner /src/ added the "rid" (i.e. a unique id per resource unit) in various debug outputs.
added the "shell" of a new carbonflow output.
 
/src/output/carbonflowout.cpp
/src/output/carbonflowout.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/snag.cpp
/src/core/speciesresponse.cpp
/src/core/watercycle.cpp
/src/iland/iland.pro
/src/output/outputmanager.cpp
/src/tools/globalsettings.cpp
564 4911d 15h werner /src/ Improvements of the Management API and functionality.
new functionality:
* killSaplings() -> use a "MapGrid" and remove small trees specifically
* properties defining biomass remove fractions during management

Now the tree list of the management object is cleaned up after a management, i.e. successive managements without reloading the tree list are possible.
 
/src/core/management.cpp
/src/core/management.h
/src/core/resourceunitspecies.cpp
/src/core/sapling.cpp
/src/core/sapling.h
/src/core/snag.cpp
/src/core/tree.cpp
/src/core/tree.h
/src/tools/mapgrid.cpp
/src/tools/mapgrid.h
521 4960d 20h werner /src/ moved snag dynamics from rus-level to ru-level  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/snag.h
/src/core/tree.cpp
/src/output/dynamicstandout.cpp
/src/tools/globalsettings.cpp
518 4979d 15h werner /src/core/ while fixing #513 a bug slipped in that reduced stand outputs.  
/src/core/model.cpp
/src/core/resourceunitspecies.cpp
513 4981d 19h werner /src/core/ fixed a nasty bug: if one tree species succeeded to establish on a formerly empty RU, the saplings of other species were killed (well, not directly, but the environment was not recalculated leading to a f_env value of 0).  
/src/core/production3pg.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/tree.cpp
496 5007d 22h werner /src/core/ changed the behavior of the water-cycle wrt establishment: now the water cycle is executed even if no adult trees are on a resource unit  
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/watercycle.cpp
/src/core/watercycle.h
490 5008d 23h werner /src/core/ added calculation of the climate indicator "re" used for snag dynamics (decay rate).  
/src/core/climate.h
/src/core/grid.h
/src/core/resourceunitspecies.cpp
/src/core/snag.cpp
/src/core/snag.h
/src/core/watercycle.h
477 5011d 20h werner /src/ testing and refining snag dynamics (esp. debug outputs)  
/src/core/resourceunitspecies.cpp
/src/core/snag.cpp
/src/core/snag.h
/src/iland/mainwindow.cpp
/src/iland/mainwindow.h
/src/iland/mainwindow.ui
/src/tools/globalsettings.cpp
475 5011d 21h werner /src/ * Snag dynamics
debug output "SnagDynamics"
life cycle of Snag objects
include Snag Dynamics in newYear / year end routines

* threadrunner.cpp: parallel execution of species related tasks, e.g. the seed dispersal. In the current form, the ThreadRunner is much nicer:
ThreadRunner runner(mActiveSpecies);
runner.run(func_ptr);
 
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/snag.cpp
/src/core/snag.h
/src/core/species.h
/src/core/speciesset.cpp
/src/core/threadrunner.cpp
/src/core/threadrunner.h
/src/tools/globalsettings.cpp
/src/tools/globalsettings.h
471 5016d 00h werner /src/ added "refRatio" to debug output for establishment.  
/src/core/resourceunitspecies.cpp
/src/tools/globalsettings.cpp
468 5016d 19h werner /src/ starting the implementation of the snag dynamics submodule.
New class: Snag
added Snag to ResourceUnitSpecies
added links to Snag in Tree
 
/src/core/snag.cpp
/src/core/snag.h
/src/core/model.cpp
/src/core/modelsettings.h
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/tree.cpp
/src/iland/iland.pro
466 5017d 01h werner /src/ added fields to establishment debug output.  
/src/core/resourceunitspecies.cpp
/src/core/sapling.cpp
/src/core/sapling.h
/src/core/standstatistics.cpp
/src/core/standstatistics.h
/src/tools/globalsettings.cpp
462 5017d 12h werner /src/core/ if a sapling of a species is already present at a specific location (i.e.: pixel), than no other cohort of that species can regenerate on that pixel.
new function: hasSaplingAt().
 
/src/core/establishment.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/sapling.cpp
/src/core/sapling.h
458 5032d 14h werner /src/ some minor documentation things.  
/src/core/resourceunitspecies.cpp
/src/core/sapling.cpp
/src/core/sapling.h
/src/iland/version.cpp
/src/tools/globalsettings.cpp
453 5067d 11h werner /src/ sapling growth now in a basic working state. started to implement recruitment. One bug with the "maximum-establishment-height-grid" known.
added also visualization of regeneration layer. Once I have time, I should restructure the drawing/visualization code as it gets quirky (and a paper-concept is available...)
 
/src/core/grid.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/sapling.cpp
/src/core/sapling.h
/src/core/species.cpp
/src/core/species.h
/src/core/standstatistics.cpp
/src/core/standstatistics.h
/src/iland/mainwindow.cpp
/src/iland/mainwindow.h
/src/tools/expressionwrapper.cpp
452 5067d 17h werner /src/ searching for a bug in the sapling growth....  
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/sapling.cpp
/src/core/species.cpp
/src/iland/mainwindow.cpp
/src/iland/mainwindow.ui
451 5067d 20h werner /src/ further development of sapling growth  
/src/core/establishment.cpp
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/sapling.cpp
/src/core/sapling.h
/src/tools/globalsettings.cpp
450 5067d 22h werner /src/core/ implementing sapling growth...  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/sapling.cpp
/src/core/sapling.h
/src/core/species.h
442 5119d 16h werner /src/ Debug output for establishment.  
/src/core/establishment.cpp
/src/core/establishment.h
/src/core/model.cpp
/src/core/resourceunitspecies.cpp
/src/iland/mainwindow.cpp
/src/iland/mainwindow.h
/src/iland/mainwindow.ui
/src/tools/globalsettings.cpp
/src/tools/globalsettings.h
440 5120d 20h werner /src/core/ climate: added a pre-calculated value for the 10.5hrs day
including establishment calculation in the normal execution path.
 
/src/core/climate.cpp
/src/core/climate.h
/src/core/establishment.cpp
/src/core/establishment.h
/src/core/model.cpp
/src/core/model.h
/src/core/phenology.cpp
/src/core/production3pg.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/threadrunner.cpp
/src/core/threadrunner.h
438 5121d 17h werner /src/ new GridRunner class to iterate nicely over grids with different sizes.
establishment.cpp: started to integrate the whole regeneration process (including "lazy" calculation of 3pg (only if necessary)).
 
/src/core/establishment.cpp
/src/core/grid.h
/src/core/model.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/iland/mainwindow.cpp
/src/iland/tests.cpp
/src/iland/tests.h
376 5186d 22h werner /src/ calculation of an average value for aging at resource unit level.
added variable 'aging' for resource units.
changed comments.
 
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/species.cpp
/src/core/tree.cpp
/src/tools/expression.cpp
/src/tools/expressionwrapper.cpp
369 5193d 23h werner /src/ * multithreading for 3pg production (crashes)
* do 3PG calculation only if this RU has some leafarea of a species (added clear() functions)
* added GUI-accessible speciesindex-variable for trees
 
/src/core/model.cpp
/src/core/production3pg.cpp
/src/core/production3pg.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/speciesresponse.h
/src/core/threadrunner.cpp
/src/tools/expressionwrapper.cpp
278 5370d 04h werner /src/ Management output. Added a statisticsMgmt() for ResourceUnitSpecies. Complicated to get the order right.  
/src/output/managementout.cpp
/src/output/managementout.h
/src/core/management.cpp
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/tree.cpp
/src/core/tree.h
/src/iland/iland.pro
/src/output/outputmanager.cpp
277 5370d 10h werner /src/ added "Gesamtwuchsleistung" i.e. total growth.  
/src/core/model.cpp
/src/core/modelcontroller.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/standstatistics.cpp
/src/core/standstatistics.h
/src/core/tree.cpp
/src/core/tree.h
/src/output/standdeadout.cpp
/src/output/standout.cpp
247 5379d 07h werner /src/ global script object (ScriptGlobal).
Doxygen documentation refinements.
 
/src/iland/maindoc.cpp
/src/tools/scriptglobal.cpp
/src/tools/scriptglobal.h
/src/core/climate.cpp
/src/core/grid.h
/src/core/management.cpp
/src/core/model.cpp
/src/core/resourceunitspecies.cpp
/src/core/species.cpp
/src/core/speciesresponse.cpp
/src/core/stampcontainer.h
/src/core/standloader.cpp
/src/core/tree.h
/src/iland/iland.pro
/src/tools/climateconverter.cpp
/src/tools/expression.cpp
/src/tools/globalsettings.cpp
235 5381d 06h werner /src/core/ setup function  
/src/core/resourceunitspecies.cpp
230 5382d 04h werner /src/ 3PG work out  
/src/core/production3pg.cpp
/src/core/production3pg.h
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/speciesresponse.cpp
/src/core/tree.cpp
/src/output/output.cpp
/src/tools/globalsettings.cpp
229 5382d 07h werner /src/ 3pg model. fixed a problem with the setup of ResourceUnitSpecies (a classic: a pointer to a vector, which is still growing... grrrrr.... it took hours to find)  
/src/core/climate.cpp
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/speciesresponse.cpp
/src/iland/mainwindow.cpp
/src/iland/tests.cpp
/src/output/output.cpp
226 5383d 10h werner /src/core/ working on 3pg, the species specific responses and linking it all together.  
/src/core/climate.cpp
/src/core/climate.h
/src/core/modelsettings.cpp
/src/core/modelsettings.h
/src/core/phenology.cpp
/src/core/phenology.h
/src/core/production3pg.cpp
/src/core/production3pg.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/species.h
/src/core/speciesresponse.cpp
/src/core/speciesresponse.h
189 5396d 01h iland /src/ finished ressource vs. resource struggle, some cleanup within xml file
reading.
 
/src/core/model.cpp
/src/core/model.h
/src/core/production3pg.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/standloader.cpp
/src/core/tree.cpp
/src/iland/iland.pro
/src/iland/mainwindow.cpp
/src/iland/management.cpp
/src/iland/tests.cpp
/src/output/dynamicstandout.cpp
/src/output/standout.cpp
/src/output/treeout.cpp
/src/tools/expressionwrapper.cpp
/src/tools/globalsettings.cpp
/src/tools/globalsettings.h
/src/tools/xmlhelper.cpp
188 5396d 02h werner /src/core/ rename ressoure files.  
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.cpp
/src/core/resourceunitspecies.h
/src/core/ressourceunit.cpp
/src/core/ressourceunit.h
/src/core/ressourceunitspecies.cpp
/src/core/ressourceunitspecies.h
187 5396d 02h iland /src/ wow. Ressource is correctly spelled as Resource. I jerk.  
/src/core/global.h
/src/core/model.cpp
/src/core/production3pg.h
/src/core/ressourceunit.h
/src/core/ressourceunitspecies.cpp
/src/core/ressourceunitspecies.h
/src/core/standloader.cpp
/src/core/standloader.h
/src/core/threadrunner.cpp
/src/core/threadrunner.h
/src/core/tree.h
/src/iland/mainwindow.cpp
/src/iland/management.cpp
/src/iland/tests.cpp
/src/tools/expressionwrapper.cpp
/src/tools/expressionwrapper.h
/src/tools/xmlhelper.h
111 5419d 10h Werner /src/ added "RessourceUnitSpecies" (included setup and access functions). Each species has now a numeric index which is used to construct vectors of RessourceUnitSpecies per RessourceUnit.  
/src/core/ressourceunitspecies.cpp
/src/core/ressourceunitspecies.h
/src/core/ressourceunit.cpp
/src/core/ressourceunit.h
/src/core/species.h
/src/core/speciesset.cpp
/src/core/speciesset.h
/src/core/tree.cpp
/src/core/tree.h
/src/fonstudio/fonstudio.pro