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Rev Age Author Path Log message Diff
734 4468d 01h werner /trunk/src/ small "fixes" (or tries to fix) as iLand is still crashing...  
720 4533d 15h werner /trunk/src/ fixed a problem when trees died in disturbance and the (unupdated) statistics were used (e.g. the LAI for calculating the water cycle). Now for affected resource units, not only the treelists but also the RU-statistics are updated.
implemented a "radiating" mechanism of border cells. If stand-grid-cells (i.e. 10m height grid resolution) are marked as "outside and forest", then the cells "radiate" some influence on the LIF into the project area. Thus, trees on the edge of the project do *not* have properties of trees standing on a stand edge. Currently, the form/amount of this edge-effect is hard coded.
 
697 4594d 18h werner /trunk/ Doxygen documentation revisited.
After re-establishing doxygen documentation (last update: 2009) a lot of smaller/medium documentation fixes.
Documentation is something that could definitely be always improved ;)
 
671 4637d 22h werner /trunk/src/ Necessary changes for GPL licence (i.e. headers in all source files)  
664 4679d 21h werner /trunk/src/ fixes in the fire module  
662 4680d 22h werner /trunk/src/ continued to work on the fire module. Include the fire severity (i.e. mortality due to fire). This had various other impacts, e.g., on the carbon cycle of saplings.  
639 4798d 19h werner / move current content to the "trunk"  
626 4850d 16h werner /src/core/ added some debug timers plus completed the executable directory (added the sqlite-plugin)  
611 4862d 15h werner / new version fixing some bugs with multi-threading and the case of the full HJA simulation.  
609 4864d 02h werner /src/ implementing CarbonFlow output and book keeping code.  
605 4868d 01h werner /src/ added the "rid" (i.e. a unique id per resource unit) in various debug outputs.
added the "shell" of a new carbonflow output.
 
600 4868d 16h werner /src/ corrected grid export (flipping of y-axis)
added initialization of saplings; StandLoader contains now a routine similar to the one for larger trees to distribute saplings; additionally, a script function (Globals.addSaplingsOnStand()) can be used to use this functionality.
 
591 4895d 22h werner /src/core/ scaled soil inputs to a 1ha size of the soil -> the soil engine always calculates with a full 1ha resource unit.
No additional scaling occures; i.e. outputs from the soil carbon in the Carbon-output need to be re-scaled!
 
575 4899d 00h werner /src/ * renamed toString() from IException to message() (several occurences).
* added a "name" property to the MapGridWrapper
 
574 4899d 03h werner /src/ * modified outputs to write only rows for valid resource units
* dropped setting "woodDecompRate" (snag.cpp)
* calculate the "stockableArea" of a resource unit based on the stand grid
* use the stockableArea for calculation of LAI
 
569 4904d 03h werner /src/ added a "id" for resource units (which comes from initialization grids).
fixed a bug that ru-grids only worked well on second creation of the model.
 
534 4953d 22h werner /src/ large(r) update of the soil model. Now, the 'kyl' and 'kyr' parameters (i.e. decomposition rates for the litter/wood-soil pool) are now species parameters and calculated dynamically from the litter inputs.  
531 4957d 14h werner /src/core/ if dynamic availableNitrogen is enabled, a first value for Nav is calculated during setup (i.e.: one year of soil dynamics without input(!) is simulated). For this, a value of '1.0' for the pre-calculation a value for the climate-modifier 're' is assumed.  
530 4957d 14h werner /src/ enabled the dynamic coupling of available nitrogen from the soil module with the "available nitrogen" (fertility rating) used for calculations of species responses.  
529 4957d 15h werner /src/core/ setup initial values for soil pools (read from XML)  
526 4957d 19h werner /src/ embedding the soil model into iLand. renamed the snag decay debug output.  
521 4958d 23h werner /src/ moved snag dynamics from rus-level to ru-level  
513 4979d 22h werner /src/core/ fixed a nasty bug: if one tree species succeeded to establish on a formerly empty RU, the saplings of other species were killed (well, not directly, but the environment was not recalculated leading to a f_env value of 0).  
503 4988d 20h werner /src/ water cycle: fixed a regression with the calculation of average aging.
added "canopyConductance" as variable for resource units.
added a GUI option to change the current log level.
 
502 4989d 01h werner /src/core/ water cycle for resource units without adult trees; adapted water use for RUs with only few stands by adding "ground cover" up to LAI=1 with default characteristics.  
496 5006d 01h werner /src/core/ changed the behavior of the water-cycle wrt establishment: now the water cycle is executed even if no adult trees are on a resource unit  
484 5009d 00h werner /src/ modified release of memory of trees; QVector::resere() does not actually shrink memory; so now "squeeze()" is used.  
482 5009d 01h werner /src/core/ fixed bug that recruited trees modified the average aging calculation; added some diagnostic code here and there.  
475 5010d 00h werner /src/ * Snag dynamics
debug output "SnagDynamics"
life cycle of Snag objects
include Snag Dynamics in newYear / year end routines

* threadrunner.cpp: parallel execution of species related tasks, e.g. the seed dispersal. In the current form, the ThreadRunner is much nicer:
ThreadRunner runner(mActiveSpecies);
runner.run(func_ptr);
 
461 5015d 19h werner /src/core/ fixed a bug in bookkeeping values from saplings per ru (average height/average age). little refactoring and improvement of code that deals with "SaplingMaps".  
455 5065d 01h werner /src/ changed the layout of the resourceUnitSpecies from a QVector to a QList<ResourceUnitSpecies*>. This seems to be much more appropriate. But caused many small changes throughout the project.  
454 5065d 01h werner /src/ improvements of regeneration/establishment. Looking for bug that stems obviously from copy-constructor problems (resourceUnitSpecies).  
453 5065d 15h werner /src/ sapling growth now in a basic working state. started to implement recruitment. One bug with the "maximum-establishment-height-grid" known.
added also visualization of regeneration layer. Once I have time, I should restructure the drawing/visualization code as it gets quirky (and a paper-concept is available...)
 
452 5065d 20h werner /src/ searching for a bug in the sapling growth....  
451 5065d 23h werner /src/ further development of sapling growth  
450 5066d 01h werner /src/core/ implementing sapling growth...  
438 5119d 20h werner /src/ new GridRunner class to iterate nicely over grids with different sizes.
establishment.cpp: started to integrate the whole regeneration process (including "lazy" calculation of 3pg (only if necessary)).
 
436 5119d 23h werner /src/ climate: added totalRadiation() function
production3pg.cpp: added the calculation of the f_env,yr (total environmental performance of a species)
 
431 5144d 15h werner /src/ included the logLevel-Functions at several locations in the source code.
added a option to only display debug messages in the DebugTimer destructor when elapsed time is longer than one millisecond.
 
376 5185d 02h werner /src/ calculation of an average value for aging at resource unit level.
added variable 'aging' for resource units.
changed comments.