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1203 2805d 14h werner /branches/iland_regen/src/ added the missing "ActPlanting" functions for the "new" regeneration module.  
/branches/iland_regen/src/abe/actplanting.cpp
/branches/iland_regen/src/abe/actplanting.h
/branches/iland_regen/src/core/management.cpp
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/resourceunit.h
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/standloader.cpp
/branches/iland_regen/src/core/version.cpp
/branches/iland_regen/src/tools/mapgrid.cpp
/branches/iland_regen/src/tools/mapgrid.h
1202 2826d 10h werner /branches/iland_regen/src/ searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation).
 
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/snag.cpp
/branches/iland_regen/src/core/standstatistics.cpp
/branches/iland_regen/src/core/standstatistics.h
/branches/iland_regen/src/output/carbonflowout.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlemodule.cpp
1196 2896d 09h werner /branches/iland_regen/src/ StandGPP debug output (instead of the missing StandNPP) output  
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/modelcontroller.cpp
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/tree.cpp
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/tools/globalsettings.cpp
/branches/iland_regen/src/tools/globalsettings.h
1184 2916d 16h werner /branches/iland_regen/src/ update JS documentation  
/branches/iland_regen/src/apidoc/ABE/abe_doc.js
/branches/iland_regen/src/apidoc/yuidoc.json
/branches/iland_regen/src/core/resourceunit.cpp
1178 2950d 09h werner /branches/iland_regen/src/ update the seed dispersal kernel: take the density of a point instead the density at a given radius
new option in the GUI to visualize newly created saplings
update of how sapling numbers are calculated and arrive in the output
 
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/seeddispersal.cpp
/branches/iland_regen/src/core/seeddispersal.h
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/iland/mainwindow.ui
1162 2991d 17h werner /branches/iland_regen/src/ removed the old "mSaplings" from resource unit/model.
Open Issues:
* ActPlanting [init/remove of saplings]
* MapGrid: retrieve list of saplings
* testing of standloader
 
/branches/iland_regen/src/abe/actplanting.cpp
/branches/iland_regen/src/core/establishment.cpp
/branches/iland_regen/src/core/management.cpp
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/resourceunit.h
/branches/iland_regen/src/core/resourceunitspecies.cpp
/branches/iland_regen/src/core/resourceunitspecies.h
/branches/iland_regen/src/core/sapling.cpp
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/species.h
/branches/iland_regen/src/core/standloader.cpp
/branches/iland_regen/src/iland/tests.cpp
/branches/iland_regen/src/output/saplingout.cpp
/branches/iland_regen/src/output/snapshot.cpp
/branches/iland_regen/src/plugins/fire/firemodule.cpp
/branches/iland_regen/src/plugins/wind/windmodule.cpp
/branches/iland_regen/src/tools/mapgrid.cpp
/branches/iland_regen/src/tools/mapgrid.h
1159 2993d 06h werner /branches/iland_regen/src/ Changed memory layout of regeneration module.
problems now with invalid (NaN) soil values. Needs further analysis ;)
 
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/resourceunit.h
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/standloader.cpp
/branches/iland_regen/src/iland/mainwindow.cpp
1157 2993d 19h werner /branches/iland_regen/ merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch).  
/branches/iland_regen/src/output/waterout.cpp
/branches/iland_regen/src/output/waterout.h
/branches/iland_regen
/branches/iland_regen/src/abe/actsalvage.cpp
/branches/iland_regen/src/abe/actsalvage.h
/branches/iland_regen/src/abe/fmstand.cpp
/branches/iland_regen/src/abe/fmstand.h
/branches/iland_regen/src/abe/fmtreelist.cpp
/branches/iland_regen/src/abe/fmunit.cpp
/branches/iland_regen/src/abe/fmunit.h
/branches/iland_regen/src/abe/forestmanagementengine.cpp
/branches/iland_regen/src/abe/forestmanagementengine.h
/branches/iland_regen/src/abe/output/abestandout.cpp
/branches/iland_regen/src/abe/output/abestandremovalout.cpp
/branches/iland_regen/src/abe/scheduler.cpp
/branches/iland_regen/src/abe/scheduler.h
/branches/iland_regen/src/core/climate.h
/branches/iland_regen/src/core/grasscover.h
/branches/iland_regen/src/core/grid.h
/branches/iland_regen/src/core/model.cpp
/branches/iland_regen/src/core/model.h
/branches/iland_regen/src/core/modelcontroller.cpp
/branches/iland_regen/src/core/production3pg.cpp
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/resourceunit.h
/branches/iland_regen/src/core/resourceunitspecies.cpp
/branches/iland_regen/src/core/sapling.cpp
/branches/iland_regen/src/core/snag.cpp
/branches/iland_regen/src/core/snag.h
/branches/iland_regen/src/core/soil.cpp
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/speciesset.cpp
/branches/iland_regen/src/core/standloader.cpp
/branches/iland_regen/src/core/standstatistics.cpp
/branches/iland_regen/src/core/standstatistics.h
/branches/iland_regen/src/core/threadrunner.cpp
/branches/iland_regen/src/core/threadrunner.h
/branches/iland_regen/src/core/tree.cpp
/branches/iland_regen/src/core/tree.h
/branches/iland_regen/src/core/watercycle.cpp
/branches/iland_regen/src/core/watercycle.h
/branches/iland_regen/src/iland/iland.pro
/branches/iland_regen/src/iland/mainwindow.cpp
/branches/iland_regen/src/iland/tests.cpp
/branches/iland_regen/src/iland/version.cpp
/branches/iland_regen/src/ilandc/consoleshell.cpp
/branches/iland_regen/src/ilandc/ilandc.pro
/branches/iland_regen/src/output/carbonflowout.cpp
/branches/iland_regen/src/output/carbonflowout.h
/branches/iland_regen/src/output/carbonout.cpp
/branches/iland_regen/src/output/carbonout.h
/branches/iland_regen/src/output/dynamicstandout.cpp
/branches/iland_regen/src/output/landscapeout.cpp
/branches/iland_regen/src/output/managementout.cpp
/branches/iland_regen/src/output/outputmanager.cpp
/branches/iland_regen/src/output/snapshot.cpp
/branches/iland_regen/src/output/standout.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetle.pro
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/iland_regen/src/plugins/barkbeetle/barkbeetleout.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlescript.cpp
/branches/iland_regen/src/plugins/barkbeetle/barkbeetlescript.h
/branches/iland_regen/src/plugins/fire/fire.pro
/branches/iland_regen/src/plugins/fire/firemodule.cpp
/branches/iland_regen/src/plugins/wind/wind.pro
/branches/iland_regen/src/plugins/wind/windmodule.cpp
/branches/iland_regen/src/plugins/wind/windmodule.h
/branches/iland_regen/src/plugins/wind/windscript.cpp
/branches/iland_regen/src/plugins/wind/windscript.h
/branches/iland_regen/src/tools/colors.cpp
/branches/iland_regen/src/tools/expressionwrapper.cpp
/branches/iland_regen/src/tools/gisgrid.cpp
/branches/iland_regen/src/tools/gisgrid.h
/branches/iland_regen/src/tools/globalsettings.cpp
/branches/iland_regen/src/tools/globalsettings.h
/branches/iland_regen/src/tools/scriptglobal.cpp
/branches/iland_regen/src/tools/scriptglobal.h
1118 3049d 15h werner /branches/iland_regen/src/core/ fixes for the new saplings, now it almost works as expected.  
/branches/iland_regen/src/core/grid.h
/branches/iland_regen/src/core/resourceunit.cpp
/branches/iland_regen/src/core/resourceunit.h
/branches/iland_regen/src/core/saplings.cpp
/branches/iland_regen/src/core/saplings.h
/branches/iland_regen/src/core/species.cpp
/branches/iland_regen/src/core/tree.cpp
1107 3060d 15h werner /branches/iland_regen/src/core/ changed the way the stocked area is calculated for not fully stocked stands. Test case was the YNP simulations of pinus contorta. It was the case that at low stocking levels (e.g. LAI=0.01, 20 trees/ha) too much light was intercepted thus boosting tree growth. We devised a more precise way of calculating stocked area based on tree crowns of individual trees. See also the test conducted for the site.  
/branches/iland_regen/src/core/resourceunit.cpp
1104 3063d 17h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
/branches/iland_regen
1040 3315d 10h werner /branches/port_qt5_64bit/src/ working on bark beetle module (continuing on antagonists)
adding species share maps to iLand visualization.
 
/branches/port_qt5_64bit/src/core/grid.h
/branches/port_qt5_64bit/src/core/resourceunit.cpp
/branches/port_qt5_64bit/src/core/resourceunit.h
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/port_qt5_64bit/src/tools/colors.cpp
1024 3355d 10h werner /branches/port_qt5_64bit/src/ working on the bark beetle module.
now on startup of the model the first year of the climate is loaded automatically.
 
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/resourceunit.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlemodule.h
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetleout.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlescript.cpp
/branches/port_qt5_64bit/src/plugins/barkbeetle/barkbeetlescript.h
/branches/port_qt5_64bit/src/plugins/barkbeetle/bbgenerations.cpp
937 3580d 10h werner /branches/port_qt5_64bit/src/ hunting some bugs in summarizing GWL  
/branches/port_qt5_64bit/src/abe/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/core/management.cpp
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/resourceunit.cpp
/branches/port_qt5_64bit/src/core/resourceunitspecies.h
936 3581d 11h werner /branches/port_qt5_64bit/src/ searching for bugs in the bookkeeping of increments, volumes.
very cumbersome....
 
/branches/port_qt5_64bit/src/abe/fomescript.cpp
/branches/port_qt5_64bit/src/abe/forestmanagementengine.cpp
/branches/port_qt5_64bit/src/abe/scheduler.cpp
/branches/port_qt5_64bit/src/core/management.cpp
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/model.h
/branches/port_qt5_64bit/src/core/resourceunit.cpp
/branches/port_qt5_64bit/src/core/resourceunitspecies.cpp
/branches/port_qt5_64bit/src/core/resourceunitspecies.h
/branches/port_qt5_64bit/src/core/standstatistics.cpp
895 3722d 16h werner /branches/port_qt5_64bit/src/core/ added "nitrogenDeposition" for dynamic soil calculation.  
/branches/port_qt5_64bit/src/core/resourceunit.cpp
/branches/port_qt5_64bit/src/core/soil.cpp
/branches/port_qt5_64bit/src/core/soil.h
824 3880d 17h werner /branches/port_qt5_64bit/src/ fixed *big* regeneration bug. The map with the height of saplings on a resource unit was used in the establishment subroutine although it was *invalid*. Now the establishment and the regeneration are (again?) in one function and use the same valid map.
this removed the strange stripes in the regeneration pattern (there should have been crashes, but weren't). Consequently, the performance debug output was modified.
added better formatting to debugtimer.cpp for large times (in hours, minutes, seconds).
 
/branches/port_qt5_64bit/src/core/establishment.cpp
/branches/port_qt5_64bit/src/core/establishment.h
/branches/port_qt5_64bit/src/core/model.cpp
/branches/port_qt5_64bit/src/core/resourceunit.cpp
/branches/port_qt5_64bit/src/core/resourceunit.h
/branches/port_qt5_64bit/src/core/standstatistics.cpp
/branches/port_qt5_64bit/src/core/standstatistics.h
/branches/port_qt5_64bit/src/iland/iland.pro
/branches/port_qt5_64bit/src/iland/mainwindow.cpp
/branches/port_qt5_64bit/src/iland/tests.cpp
/branches/port_qt5_64bit/src/tools/debugtimer.cpp
/branches/port_qt5_64bit/src/tools/debugtimer.h
/branches/port_qt5_64bit/src/tools/globalsettings.cpp
779 4047d 12h werner /branches/port_qt5_64bit/  
/branches/port_qt5_64bit
738 4456d 15h werner /trunk/src/core/ small fixes (memory leaks) due to Valgrind/memcheck session  
/trunk/src/core/resourceunit.cpp
/trunk/src/core/stamp.cpp
734 4460d 16h werner /trunk/src/ small "fixes" (or tries to fix) as iLand is still crashing...  
/trunk/src/core/model.cpp
/trunk/src/core/model.h
/trunk/src/core/resourceunit.cpp
/trunk/src/core/standloader.cpp
/trunk/src/iland/mainwindow.cpp
/trunk/src/output/carbonout.cpp
720 4526d 06h werner /trunk/src/ fixed a problem when trees died in disturbance and the (unupdated) statistics were used (e.g. the LAI for calculating the water cycle). Now for affected resource units, not only the treelists but also the RU-statistics are updated.
implemented a "radiating" mechanism of border cells. If stand-grid-cells (i.e. 10m height grid resolution) are marked as "outside and forest", then the cells "radiate" some influence on the LIF into the project area. Thus, trees on the edge of the project do *not* have properties of trees standing on a stand edge. Currently, the form/amount of this edge-effect is hard coded.
 
/trunk/src/core/climate.cpp
/trunk/src/core/climate.h
/trunk/src/core/model.cpp
/trunk/src/core/model.h
/trunk/src/core/phenology.cpp
/trunk/src/core/resourceunit.cpp
/trunk/src/core/resourceunit.h
/trunk/src/core/resourceunitspecies.h
/trunk/src/core/tree.cpp
/trunk/src/core/watercycle.cpp
/trunk/src/iland/mainwindow.cpp
/trunk/src/iland/version.cpp
697 4587d 09h werner /trunk/ Doxygen documentation revisited.
After re-establishing doxygen documentation (last update: 2009) a lot of smaller/medium documentation fixes.
Documentation is something that could definitely be always improved ;)
 
/trunk/doc
/trunk/doc/iland_doxyfile.doxy
/trunk/src/core/environment.cpp
/trunk/src/core/grid.h
/trunk/src/core/layeredgrid.h
/trunk/src/core/management.cpp
/trunk/src/core/model.cpp
/trunk/src/core/modelcontroller.cpp
/trunk/src/core/phenology.cpp
/trunk/src/core/production3pg.cpp
/trunk/src/core/resourceunit.cpp
/trunk/src/core/resourceunitspecies.cpp
/trunk/src/core/sapling.cpp
/trunk/src/core/seeddispersal.cpp
/trunk/src/core/snag.cpp
/trunk/src/core/soil.cpp
/trunk/src/core/species.cpp
/trunk/src/core/speciesresponse.cpp
/trunk/src/core/speciesset.cpp
/trunk/src/core/stamp.h
/trunk/src/core/stampcontainer.h
/trunk/src/core/standloader.cpp
/trunk/src/core/standstatistics.cpp
/trunk/src/core/tree.cpp
/trunk/src/core/watercycle.cpp
/trunk/src/core/watercycle.h
/trunk/src/iland/maindoc.cpp
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/fire/firemodule.h
/trunk/src/plugins/fire/firescript.cpp
/trunk/src/tools/csvfile.cpp
/trunk/src/tools/dem.h
/trunk/src/tools/expressionwrapper.cpp
/trunk/src/tools/gisgrid.cpp
/trunk/src/tools/mapgrid.cpp
/trunk/src/tools/scriptglobal.cpp
/trunk/src/tools/sqlhelper.cpp
671 4630d 13h werner /trunk/src/ Necessary changes for GPL licence (i.e. headers in all source files)  
/trunk/src/core/climate.cpp
/trunk/src/core/climate.h
/trunk/src/core/environment.cpp
/trunk/src/core/environment.h
/trunk/src/core/establishment.cpp
/trunk/src/core/establishment.h
/trunk/src/core/exception.h
/trunk/src/core/global.h
/trunk/src/core/grid.h
/trunk/src/core/layeredgrid.h
/trunk/src/core/management.cpp
/trunk/src/core/management.h
/trunk/src/core/model.cpp
/trunk/src/core/model.h
/trunk/src/core/modelcontroller.cpp
/trunk/src/core/modelcontroller.h
/trunk/src/core/modelsettings.cpp
/trunk/src/core/modelsettings.h
/trunk/src/core/phenology.cpp
/trunk/src/core/phenology.h
/trunk/src/core/plugin_interface.h
/trunk/src/core/production3pg.cpp
/trunk/src/core/production3pg.h
/trunk/src/core/resourceunit.cpp
/trunk/src/core/resourceunit.h
/trunk/src/core/sapling.cpp
/trunk/src/core/sapling.h
/trunk/src/core/seeddispersal.cpp
/trunk/src/core/seeddispersal.h
/trunk/src/core/snag.cpp
/trunk/src/core/snag.h
/trunk/src/core/soil.cpp
/trunk/src/core/soil.h
/trunk/src/core/species.cpp
/trunk/src/core/species.h
/trunk/src/core/speciesresponse.cpp
/trunk/src/core/speciesresponse.h
/trunk/src/core/speciesset.cpp
/trunk/src/core/speciesset.h
/trunk/src/core/stamp.cpp
/trunk/src/core/stamp.h
/trunk/src/core/stampcontainer.cpp
/trunk/src/core/stampcontainer.h
/trunk/src/core/standloader.cpp
/trunk/src/core/standloader.h
/trunk/src/core/standstatistics.cpp
/trunk/src/core/standstatistics.h
/trunk/src/core/threadrunner.cpp
/trunk/src/core/threadrunner.h
/trunk/src/core/timeevents.cpp
/trunk/src/core/timeevents.h
/trunk/src/core/tree.cpp
/trunk/src/core/tree.h
/trunk/src/core/watercycle.cpp
/trunk/src/core/watercycle.h
/trunk/src/iland/aboutdialog.cpp
/trunk/src/iland/aboutdialog.h
/trunk/src/iland/aboutdialog.ui
/trunk/src/iland/mainwindow.cpp
/trunk/src/iland/mainwindow.h
/trunk/src/iland/paintarea.cpp
/trunk/src/iland/paintarea.h
/trunk/src/iland/stable.h
/trunk/src/iland/tests.cpp
/trunk/src/iland/tests.h
/trunk/src/iland/version.h
/trunk/src/output/carbonflowout.cpp
/trunk/src/output/carbonflowout.h
/trunk/src/output/carbonout.cpp
/trunk/src/output/carbonout.h
/trunk/src/output/dynamicstandout.cpp
/trunk/src/output/dynamicstandout.h
/trunk/src/output/managementout.cpp
/trunk/src/output/managementout.h
/trunk/src/output/output.cpp
/trunk/src/output/output.h
/trunk/src/output/outputmanager.cpp
/trunk/src/output/outputmanager.h
/trunk/src/output/productionout.cpp
/trunk/src/output/productionout.h
/trunk/src/output/saplingout.cpp
/trunk/src/output/saplingout.h
/trunk/src/output/standdeadout.cpp
/trunk/src/output/standdeadout.h
/trunk/src/output/standout.cpp
/trunk/src/output/standout.h
/trunk/src/output/treeout.cpp
/trunk/src/output/treeout.h
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/fire/firemodule.h
/trunk/src/plugins/fire/fireout.cpp
/trunk/src/plugins/fire/fireout.h
/trunk/src/plugins/fire/fireplugin.cpp
/trunk/src/plugins/fire/fireplugin.h
/trunk/src/tools/climateconverter.cpp
/trunk/src/tools/climateconverter.h
/trunk/src/tools/csvfile.cpp
/trunk/src/tools/csvfile.h
/trunk/src/tools/dem.cpp
/trunk/src/tools/dem.h
/trunk/src/tools/expression.cpp
/trunk/src/tools/expression.h
/trunk/src/tools/expressionwrapper.cpp
/trunk/src/tools/expressionwrapper.h
/trunk/src/tools/floatingaverage.cpp
/trunk/src/tools/floatingaverage.h
/trunk/src/tools/gisgrid.cpp
/trunk/src/tools/gisgrid.h
/trunk/src/tools/globalsettings.cpp
/trunk/src/tools/globalsettings.h
/trunk/src/tools/helper.cpp
/trunk/src/tools/helper.h
/trunk/src/tools/mapgrid.cpp
/trunk/src/tools/mapgrid.h
/trunk/src/tools/modules.cpp
/trunk/src/tools/modules.h
/trunk/src/tools/random.cpp
/trunk/src/tools/random.h
/trunk/src/tools/scriptglobal.cpp
/trunk/src/tools/scriptglobal.h
/trunk/src/tools/settingmetadata.cpp
/trunk/src/tools/settingmetadata.h
/trunk/src/tools/sqlhelper.cpp
/trunk/src/tools/sqlhelper.h
/trunk/src/tools/ticktack.cpp
/trunk/src/tools/ticktack.h
/trunk/src/tools/xmlhelper.cpp
/trunk/src/tools/xmlhelper.h
664 4672d 12h werner /trunk/src/ fixes in the fire module  
/trunk/src/core/model.cpp
/trunk/src/core/resourceunit.cpp
/trunk/src/core/resourceunit.h
/trunk/src/core/soil.cpp
/trunk/src/core/tree.cpp
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/tools/modules.cpp
662 4673d 13h werner /trunk/src/ continued to work on the fire module. Include the fire severity (i.e. mortality due to fire). This had various other impacts, e.g., on the carbon cycle of saplings.  
/trunk/src/core/grid.h
/trunk/src/core/management.cpp
/trunk/src/core/resourceunit.cpp
/trunk/src/core/resourceunit.h
/trunk/src/core/sapling.cpp
/trunk/src/core/sapling.h
/trunk/src/core/snag.h
/trunk/src/core/soil.cpp
/trunk/src/core/soil.h
/trunk/src/output/managementout.cpp
/trunk/src/plugins/fire/firemodule.cpp
/trunk/src/plugins/fire/firemodule.h
639 4791d 10h werner / move current content to the "trunk"  
/trunk/executable
/trunk/src
/executable
/src
626 4843d 07h werner /src/core/ added some debug timers plus completed the executable directory (added the sqlite-plugin)  
/src/core/establishment.cpp
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/speciesresponse.cpp
/src/core/watercycle.cpp
611 4855d 06h werner / new version fixing some bugs with multi-threading and the case of the full HJA simulation.  
/executable/iland.exe
/src/core/model.cpp
/src/core/phenology.cpp
/src/core/resourceunit.cpp
/src/core/sapling.cpp
/src/core/soil.cpp
/src/iland/mainwindow.cpp
/src/iland/version.cpp
/src/tools/globalsettings.cpp
609 4856d 17h werner /src/ implementing CarbonFlow output and book keeping code.  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/snag.cpp
/src/core/snag.h
/src/core/soil.cpp
/src/core/soil.h
/src/output/carbonflowout.cpp
605 4860d 16h werner /src/ added the "rid" (i.e. a unique id per resource unit) in various debug outputs.
added the "shell" of a new carbonflow output.
 
/src/output/carbonflowout.cpp
/src/output/carbonflowout.h
/src/core/resourceunit.cpp
/src/core/resourceunitspecies.cpp
/src/core/snag.cpp
/src/core/speciesresponse.cpp
/src/core/watercycle.cpp
/src/iland/iland.pro
/src/output/outputmanager.cpp
/src/tools/globalsettings.cpp
600 4861d 07h werner /src/ corrected grid export (flipping of y-axis)
added initialization of saplings; StandLoader contains now a routine similar to the one for larger trees to distribute saplings; additionally, a script function (Globals.addSaplingsOnStand()) can be used to use this functionality.
 
/src/core/grid.h
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/resourceunitspecies.h
/src/core/sapling.cpp
/src/core/sapling.h
/src/core/speciesset.h
/src/core/standloader.cpp
/src/core/standloader.h
/src/tools/mapgrid.cpp
/src/tools/scriptglobal.cpp
/src/tools/scriptglobal.h
591 4888d 13h werner /src/core/ scaled soil inputs to a 1ha size of the soil -> the soil engine always calculates with a full 1ha resource unit.
No additional scaling occures; i.e. outputs from the soil carbon in the Carbon-output need to be re-scaled!
 
/src/core/resourceunit.cpp
/src/core/soil.cpp
/src/core/soil.h
575 4891d 15h werner /src/ * renamed toString() from IException to message() (several occurences).
* added a "name" property to the MapGridWrapper
 
/src/core/environment.cpp
/src/core/exception.h
/src/core/management.cpp
/src/core/model.cpp
/src/core/modelcontroller.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/speciesset.cpp
/src/core/standstatistics.cpp
/src/iland/mainwindow.cpp
/src/iland/tests.cpp
/src/tools/mapgrid.cpp
/src/tools/mapgrid.h
/src/tools/scriptglobal.cpp
/src/tools/scriptglobal.h
574 4891d 18h werner /src/ * modified outputs to write only rows for valid resource units
* dropped setting "woodDecompRate" (snag.cpp)
* calculate the "stockableArea" of a resource unit based on the stand grid
* use the stockableArea for calculation of LAI
 
/src/core/grid.h
/src/core/model.cpp
/src/core/model.h
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/snag.cpp
/src/output/dynamicstandout.cpp
/src/output/managementout.cpp
/src/output/productionout.cpp
/src/output/saplingout.cpp
/src/output/standdeadout.cpp
/src/output/standout.cpp
/src/tools/expressionwrapper.cpp
/src/tools/globalsettings.h
569 4896d 18h werner /src/ added a "id" for resource units (which comes from initialization grids).
fixed a bug that ru-grids only worked well on second creation of the model.
 
/src/core/environment.cpp
/src/core/environment.h
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/tools/expressionwrapper.cpp
534 4946d 13h werner /src/ large(r) update of the soil model. Now, the 'kyl' and 'kyr' parameters (i.e. decomposition rates for the litter/wood-soil pool) are now species parameters and calculated dynamically from the litter inputs.  
/src/core/resourceunit.cpp
/src/core/snag.cpp
/src/core/snag.h
/src/core/soil.cpp
/src/core/soil.h
/src/core/species.cpp
/src/core/species.h
/src/core/speciesset.cpp
/src/iland/mainwindow.ui
/src/iland/tests.cpp
/src/tools/globalsettings.cpp
531 4950d 05h werner /src/core/ if dynamic availableNitrogen is enabled, a first value for Nav is calculated during setup (i.e.: one year of soil dynamics without input(!) is simulated). For this, a value of '1.0' for the pre-calculation a value for the climate-modifier 're' is assumed.  
/src/core/resourceunit.cpp
530 4950d 05h werner /src/ enabled the dynamic coupling of available nitrogen from the soil module with the "available nitrogen" (fertility rating) used for calculations of species responses.  
/src/core/modelsettings.cpp
/src/core/modelsettings.h
/src/core/resourceunit.cpp
/src/core/soil.cpp
/src/tools/xmlhelper.cpp
529 4950d 06h werner /src/core/ setup initial values for soil pools (read from XML)  
/src/core/resourceunit.cpp
/src/core/snag.h
/src/core/soil.cpp
/src/core/soil.h
526 4950d 10h werner /src/ embedding the soil model into iLand. renamed the snag decay debug output.  
/src/core/model.cpp
/src/core/resourceunit.cpp
/src/core/resourceunit.h
/src/core/snag.cpp
/src/core/snag.h
/src/core/soil.cpp
/src/core/soil.h
/src/iland/mainwindow.cpp
/src/iland/tests.cpp
/src/tools/globalsettings.cpp
/src/tools/globalsettings.h