| Rev |
Age |
Author |
Path |
Log message |
Diff |
| 1203 |
2798d 14h |
werner |
/branches/iland_regen/src/ |
added the missing "ActPlanting" functions for the "new" regeneration module. |
|
| 1202 |
2819d 11h |
werner |
/branches/iland_regen/src/ |
searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation). |
|
| 1196 |
2889d 10h |
werner |
/branches/iland_regen/src/ |
StandGPP debug output (instead of the missing StandNPP) output |
|
| 1184 |
2909d 16h |
werner |
/branches/iland_regen/src/ |
update JS documentation |
|
| 1178 |
2943d 10h |
werner |
/branches/iland_regen/src/ |
update the seed dispersal kernel: take the density of a point instead the density at a given radius
new option in the GUI to visualize newly created saplings
update of how sapling numbers are calculated and arrive in the output |
|
| 1162 |
2984d 17h |
werner |
/branches/iland_regen/src/ |
removed the old "mSaplings" from resource unit/model.
Open Issues:
* ActPlanting [init/remove of saplings]
* MapGrid: retrieve list of saplings
* testing of standloader |
|
| 1159 |
2986d 07h |
werner |
/branches/iland_regen/src/ |
Changed memory layout of regeneration module.
problems now with invalid (NaN) soil values. Needs further analysis ;) |
|
| 1157 |
2986d 20h |
werner |
/branches/iland_regen/ |
merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch). |
|
| 1118 |
3042d 16h |
werner |
/branches/iland_regen/src/core/ |
fixes for the new saplings, now it almost works as expected. |
|
| 1107 |
3053d 15h |
werner |
/branches/iland_regen/src/core/ |
changed the way the stocked area is calculated for not fully stocked stands. Test case was the YNP simulations of pinus contorta. It was the case that at low stocking levels (e.g. LAI=0.01, 20 trees/ha) too much light was intercepted thus boosting tree growth. We devised a more precise way of calculating stocked area based on tree crowns of individual trees. See also the test conducted for the site. |
|
| 1104 |
3056d 17h |
werner |
/branches/iland_regen/ |
Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone |
|
| 1040 |
3308d 11h |
werner |
/branches/port_qt5_64bit/src/ |
working on bark beetle module (continuing on antagonists)
adding species share maps to iLand visualization. |
|
| 1024 |
3348d 11h |
werner |
/branches/port_qt5_64bit/src/ |
working on the bark beetle module.
now on startup of the model the first year of the climate is loaded automatically. |
|
| 937 |
3573d 11h |
werner |
/branches/port_qt5_64bit/src/ |
hunting some bugs in summarizing GWL |
|
| 936 |
3574d 12h |
werner |
/branches/port_qt5_64bit/src/ |
searching for bugs in the bookkeeping of increments, volumes.
very cumbersome.... |
|
| 895 |
3715d 17h |
werner |
/branches/port_qt5_64bit/src/core/ |
added "nitrogenDeposition" for dynamic soil calculation. |
|
| 824 |
3873d 17h |
werner |
/branches/port_qt5_64bit/src/ |
fixed *big* regeneration bug. The map with the height of saplings on a resource unit was used in the establishment subroutine although it was *invalid*. Now the establishment and the regeneration are (again?) in one function and use the same valid map.
this removed the strange stripes in the regeneration pattern (there should have been crashes, but weren't). Consequently, the performance debug output was modified.
added better formatting to debugtimer.cpp for large times (in hours, minutes, seconds). |
|
| 779 |
4040d 13h |
werner |
/branches/port_qt5_64bit/ |
|
|
| 738 |
4449d 15h |
werner |
/trunk/src/core/ |
small fixes (memory leaks) due to Valgrind/memcheck session |
|
| 734 |
4453d 17h |
werner |
/trunk/src/ |
small "fixes" (or tries to fix) as iLand is still crashing... |
|
| 720 |
4519d 07h |
werner |
/trunk/src/ |
fixed a problem when trees died in disturbance and the (unupdated) statistics were used (e.g. the LAI for calculating the water cycle). Now for affected resource units, not only the treelists but also the RU-statistics are updated.
implemented a "radiating" mechanism of border cells. If stand-grid-cells (i.e. 10m height grid resolution) are marked as "outside and forest", then the cells "radiate" some influence on the LIF into the project area. Thus, trees on the edge of the project do *not* have properties of trees standing on a stand edge. Currently, the form/amount of this edge-effect is hard coded. |
|
| 697 |
4580d 10h |
werner |
/trunk/ |
Doxygen documentation revisited.
After re-establishing doxygen documentation (last update: 2009) a lot of smaller/medium documentation fixes.
Documentation is something that could definitely be always improved ;) |
|
| 671 |
4623d 13h |
werner |
/trunk/src/ |
Necessary changes for GPL licence (i.e. headers in all source files) |
|
| 664 |
4665d 13h |
werner |
/trunk/src/ |
fixes in the fire module |
|
| 662 |
4666d 13h |
werner |
/trunk/src/ |
continued to work on the fire module. Include the fire severity (i.e. mortality due to fire). This had various other impacts, e.g., on the carbon cycle of saplings. |
|
| 639 |
4784d 11h |
werner |
/ |
move current content to the "trunk" |
|
| 626 |
4836d 07h |
werner |
/src/core/ |
added some debug timers plus completed the executable directory (added the sqlite-plugin) |
|
| 611 |
4848d 07h |
werner |
/ |
new version fixing some bugs with multi-threading and the case of the full HJA simulation. |
|
| 609 |
4849d 18h |
werner |
/src/ |
implementing CarbonFlow output and book keeping code. |
|
| 605 |
4853d 16h |
werner |
/src/ |
added the "rid" (i.e. a unique id per resource unit) in various debug outputs.
added the "shell" of a new carbonflow output. |
|
| 600 |
4854d 07h |
werner |
/src/ |
corrected grid export (flipping of y-axis)
added initialization of saplings; StandLoader contains now a routine similar to the one for larger trees to distribute saplings; additionally, a script function (Globals.addSaplingsOnStand()) can be used to use this functionality. |
|
| 591 |
4881d 13h |
werner |
/src/core/ |
scaled soil inputs to a 1ha size of the soil -> the soil engine always calculates with a full 1ha resource unit.
No additional scaling occures; i.e. outputs from the soil carbon in the Carbon-output need to be re-scaled! |
|
| 575 |
4884d 16h |
werner |
/src/ |
* renamed toString() from IException to message() (several occurences).
* added a "name" property to the MapGridWrapper |
|
| 574 |
4884d 18h |
werner |
/src/ |
* modified outputs to write only rows for valid resource units
* dropped setting "woodDecompRate" (snag.cpp)
* calculate the "stockableArea" of a resource unit based on the stand grid
* use the stockableArea for calculation of LAI |
|
| 569 |
4889d 19h |
werner |
/src/ |
added a "id" for resource units (which comes from initialization grids).
fixed a bug that ru-grids only worked well on second creation of the model. |
|
| 534 |
4939d 14h |
werner |
/src/ |
large(r) update of the soil model. Now, the 'kyl' and 'kyr' parameters (i.e. decomposition rates for the litter/wood-soil pool) are now species parameters and calculated dynamically from the litter inputs. |
|
| 531 |
4943d 06h |
werner |
/src/core/ |
if dynamic availableNitrogen is enabled, a first value for Nav is calculated during setup (i.e.: one year of soil dynamics without input(!) is simulated). For this, a value of '1.0' for the pre-calculation a value for the climate-modifier 're' is assumed. |
|
| 530 |
4943d 06h |
werner |
/src/ |
enabled the dynamic coupling of available nitrogen from the soil module with the "available nitrogen" (fertility rating) used for calculations of species responses. |
|
| 529 |
4943d 07h |
werner |
/src/core/ |
setup initial values for soil pools (read from XML) |
|
| 526 |
4943d 11h |
werner |
/src/ |
embedding the soil model into iLand. renamed the snag decay debug output. |
|