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1220 2783d 08h werner /branches/version1.0/ Version 1.0  
1218 2783d 10h werner / clean up repository - make 1.0 trunk again!  
1217 2783d 10h werner / clean up repository - make 1.0 trunk again!  
1210 2789d 15h werner /branches/iland_regen/ improve error message when Environment is not set up correctly.  
1204 2796d 14h werner /branches/iland_regen/src/ fixed some text strings (debug messages).  
1202 2834d 08h werner /branches/iland_regen/src/ searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation).
 
1196 2904d 07h werner /branches/iland_regen/src/ StandGPP debug output (instead of the missing StandNPP) output  
1194 2914d 10h werner /branches/iland_regen/src/ more documentation....  
1182 2929d 07h werner /branches/iland_regen/src/ Torus also effective for seed distribution
new output "SaplingDetails" (super high detail level of individual cohorts)
version information also in ilandc [move version.cpp to core]

[due to a sync problem with the SVN server, some revisions where lost: here they are:]
compiling ilandc

some code clean up - removed old code (sapling.cpp) for sapling trees and establishment.
 
1176 2963d 08h werner /branches/iland_regen/src/core/ developing the long distance dispersal functionality;
looks as if we have a conceptual problem with how we use the seed kernel functions...
more to come...
 
1165 2994d 06h werner /branches/iland_regen/src/ implementation of sprouting  
1164 2999d 08h werner /branches/iland_regen/src/ found unexpected behavior of irandom(): obviously, it return *never* the upper bound.
eg. irandom(0,3) -> values 0,1, or 2, but never 3.
changed calls to irandom() accordingly.
added also a better random selection of species in the establishment routine
 
1163 2999d 13h werner /branches/iland_regen/src/ removed the "sapling.h" everywhere.
open:
* establishment: use better random order of species (e.g. by providing N random lists in speciesSet)
 
1162 2999d 14h werner /branches/iland_regen/src/ removed the old "mSaplings" from resource unit/model.
Open Issues:
* ActPlanting [init/remove of saplings]
* MapGrid: retrieve list of saplings
* testing of standloader
 
1161 2999d 16h werner /branches/iland_regen/src/core/ water limitation of establishment  
1159 3001d 04h werner /branches/iland_regen/src/ Changed memory layout of regeneration module.
problems now with invalid (NaN) soil values. Needs further analysis ;)
 
1158 3001d 10h werner /branches/iland_regen/src/ further performance improvements in regeneration/sapling module.
In total (sim 80 yrs WBT 2km2, from bare ground), iLand is +- 35% faster:
* seed dispersal (not today)
* optimized use of LRI-correction
* better linearization in sapling growth (height growth potential)
 
1157 3001d 16h werner /branches/iland_regen/ merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch).  
1117 3059d 05h werner /branches/iland_regen/src/ including loading of saplings of snapshots....  
1115 3062d 07h werner /branches/iland_regen/src/ integrating sapling growth, testing  
1114 3062d 08h werner /branches/iland_regen/src/ new output for tree removals ("landscape_removed").  
1111 3063d 07h werner /branches/iland_regen/src/ first draft of the new "establishment"
added the "Saplings", the new container for establishment/sapling growth
some basic functionality is already there...
 
1104 3071d 14h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
1102 3072d 03h werner /branches/port_qt5_64bit/src/ fixed couple of clang warnings.

some debugging/profiling work w.r.t. establishment/regen.
 
1089 3138d 08h werner /branches/port_qt5_64bit/src/ ABE learned some new tricks ....  
1087 3142d 07h werner /branches/port_qt5_64bit/src/ added "flushing" of log messages.
fixed a bug when some resource units were 0 in setting up the wind module.
 
1085 3146d 08h werner /branches/port_qt5_64bit/src/ working on barkbeetle module (fixing problems, some small modifications, ...)
improving the JS-based spatial analysis toolkit.
 
1071 3176d 09h werner /branches/port_qt5_64bit/src/ alternative mortality formulation
COST PROFOUND exercise (H. Bugmann)
 
1068 3181d 16h werner /branches/port_qt5_64bit/src/ some optimizations for grass / establishment
START
 
1065 3183d 04h werner /branches/port_qt5_64bit/src/ interaction of bark beetle and wind disturbances.  
1064 3184d 08h werner /branches/port_qt5_64bit/src/ many changes. Most notably:
* improvements in the grass-cover sub Modules
* interaction between wind and bark beetle
* javascript function to extract seed-distribution-maps
* fixed a bug when continuous seed input was assumed
 
1063 3187d 09h werner /branches/port_qt5_64bit/src/ implementing a first version of the browsing submodule.

many small improvements for ABE.
 
1062 3189d 07h werner /branches/port_qt5_64bit/src/ small fixes for ABE,

implementation of v1 of the "grass"-model (herbs and grasses on the ground).
 
1058 3197d 10h werner /branches/port_qt5_64bit/src/ Changes in ABE:
new grid (stand treatment program), and now STP is shown when clicking on a standGrid
additional warnings when STPs are not properly defined

other changes:
more recent files, recent files are saved before creating the model
fixed splash screenshot
fixed potential bug in setting up saplings
new JS-function Globals.reloadABE() --> force the reload of the agent based forest engine module
 
1032 3352d 16h werner /branches/port_qt5_64bit/src/ fixed compiler warnings (compiled again with GCC), and edited *.pro files for GCC.  
1024 3363d 08h werner /branches/port_qt5_64bit/src/ working on the bark beetle module.
now on startup of the model the first year of the climate is loaded automatically.
 
1013 3406d 07h werner /branches/port_qt5_64bit/src/ working on the bark beetle module.
Now jigsaw start falling into place ;)
 
1011 3406d 14h werner /branches/port_qt5_64bit/src/core/ optimized the way how climate is loaded when the simulated landscape is smaller than the whole defined landscape: now the actual creating of the climate-data structures happens only if they are really accessed (e.g. for the nationalpark we have 200 climate clusters, for a test region we have only 10 or 20 clusters). This reduces startup time considerably: (debug mode): from 2min 20secs to 40 secs. Good for testing ;)  
1001 3421d 09h werner /branches/port_qt5_64bit/src/ removed some of the "DebugTimer" --- they tend to cause problems especially when multi-threading is enabled.  
999 3422d 11h werner /branches/port_qt5_64bit/src/core/ trying to find crash on VSC