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/********************************************************************************************

/********************************************************************************************

**    iLand - an individual based forest landscape and disturbance model

**    iLand - an individual based forest landscape and disturbance model

**    http://iland.boku.ac.at

**    http://iland.boku.ac.at

**    Copyright (C) 2009-  Werner Rammer, Rupert Seidl

**    Copyright (C) 2009-  Werner Rammer, Rupert Seidl

**

**

**    This program is free software: you can redistribute it and/or modify

**    This program is free software: you can redistribute it and/or modify

**    it under the terms of the GNU General Public License as published by

**    it under the terms of the GNU General Public License as published by

**    the Free Software Foundation, either version 3 of the License, or

**    the Free Software Foundation, either version 3 of the License, or

**    (at your option) any later version.

**    (at your option) any later version.

**

**

**    This program is distributed in the hope that it will be useful,

**    This program is distributed in the hope that it will be useful,

**    but WITHOUT ANY WARRANTY; without even the implied warranty of

**    but WITHOUT ANY WARRANTY; without even the implied warranty of

**    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

**    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

**    GNU General Public License for more details.

**    GNU General Public License for more details.

**

**

**    You should have received a copy of the GNU General Public License

**    You should have received a copy of the GNU General Public License

**    along with this program.  If not, see <http://www.gnu.org/licenses/>.

**    along with this program.  If not, see <http://www.gnu.org/licenses/>.

********************************************************************************************/

********************************************************************************************/

#ifndef SPECIESSET_H

#ifndef SPECIESSET_H

#define SPECIESSET_H

#define SPECIESSET_H

#include <QtSql>

#include <QtSql>

#include "stampcontainer.h"

#include "stampcontainer.h"

#include "expression.h"

#include "expression.h"

class Species;

class Species;

class SeedDispersal;

class SeedDispersal;

class SpeciesSet

class SpeciesSet

{

{

public:

public:

    SpeciesSet();

    SpeciesSet();

    ~SpeciesSet();

    ~SpeciesSet();

    const QString &name() const { return mName; } ///< table name of the species set

    const QString &name() const { return mName; } ///< table name of the species set

    // access

    // access

    QList<Species*> activeSpecies() { return mActiveSpecies; } ///< list of species that are "active" (flag active in database)

    QList<Species*> activeSpecies() { return mActiveSpecies; } ///< list of species that are "active" (flag active in database)

    Species *species(const QString &speciesId) const { return mSpecies.value(speciesId); }

    Species *species(const QString &speciesId) const { return mSpecies.value(speciesId); }

    const Species *species(const int &index); ///< get by arbirtray index (slower than using string-id!)

    const Species *species(const int &index); ///< get by arbirtray index (slower than using string-id!)

    const StampContainer &readerStamps() { return mReaderStamp; }

    const StampContainer &readerStamps() { return mReaderStamp; }

    QVariant var(const QString& varName);

    QVariant var(const QString& varName);

    int count() const { return mSpecies.count(); }

    int count() const { return mSpecies.count(); }

    /// return 2 iterators. The range between 'rBegin' and 'rEnd' are indices of the current species set (all species are included, order is random).

    /// return 2 iterators. The range between 'rBegin' and 'rEnd' are indices of the current species set (all species are included, order is random).

    void randomSpeciesOrder(QVector<int>::const_iterator &rBegin, QVector<int>::const_iterator &rEnd);

    void randomSpeciesOrder(QVector<int>::const_iterator &rBegin, QVector<int>::const_iterator &rEnd);

    // calculations

    // calculations

    double nitrogenResponse(const double availableNitrogen, const double &responseClass) const;

    double nitrogenResponse(const double availableNitrogen, const double &responseClass) const;

    double co2Response(const double ambientCO2, const double nitrogenResponse, const double soilWaterResponse) const;

    double co2Response(const double ambientCO2, const double nitrogenResponse, const double soilWaterResponse) const;

    double lightResponse(const double lightResourceIndex, const double lightResponseClass) const;

    double lightResponse(const double lightResourceIndex, const double lightResponseClass) const;

    double LRIcorrection(const double lightResourceIndex, const double relativeHeight) const  { return mLRICorrection.calculate(lightResourceIndex, relativeHeight);}

    double LRIcorrection(const double lightResourceIndex, const double relativeHeight) const  { return mLRICorrection.calculate(lightResourceIndex, relativeHeight);}

    // maintenance

    // maintenance

    void clear();

    void clear();

    int setup();

    int setup();

    void setupRegeneration(); ///< setup of regenartion related data

    void setupRegeneration(); ///< setup of regenartion related data

    // running

    // running

    void newYear(); ///< is called at the beginning of a year

    void newYear(); ///< is called at the beginning of a year

    void regeneration(); ///< run regeneration (after growth)

    void regeneration(); ///< run regeneration (after growth)

private:

private:

    QString mName;

    QString mName;

    double nitrogenResponse(const double &availableNitrogen, const double &NA, const double &NB) const;

    double nitrogenResponse(const double &availableNitrogen, const double &NA, const double &NB) const;

    void createRandomSpeciesOrder();

    void createRandomSpeciesOrder();

    QList<Species*> mActiveSpecies; ///< list of species that are "active" (flag active in database)

    QList<Species*> mActiveSpecies; ///< list of species that are "active" (flag active in database)

    QMap<QString, Species*> mSpecies;

    QMap<QString, Species*> mSpecies;

    static const int mNRandomSets = 20;

    static const int mNRandomSets = 20;

    QVector<int> mRandomSpeciesOrder;

    QVector<int> mRandomSpeciesOrder;

    QSqlQuery *mSetupQuery;

    QSqlQuery *mSetupQuery;

    StampContainer mReaderStamp;

    StampContainer mReaderStamp;

    // nitrogen response classes

    // nitrogen response classes

    double mNitrogen_1a, mNitrogen_1b; ///< parameters of nitrogen response class 1

    double mNitrogen_1a, mNitrogen_1b; ///< parameters of nitrogen response class 1

    double mNitrogen_2a, mNitrogen_2b; ///< parameters of nitrogen response class 2

    double mNitrogen_2a, mNitrogen_2b; ///< parameters of nitrogen response class 2

    double mNitrogen_3a, mNitrogen_3b; ///< parameters of nitrogen response class 3

    double mNitrogen_3a, mNitrogen_3b; ///< parameters of nitrogen response class 3

    // CO2 response

    // CO2 response

    double mCO2base, mCO2comp; ///< CO2 concentration of measurements (base) and CO2 compensation point (comp)

    double mCO2base, mCO2comp; ///< CO2 concentration of measurements (base) and CO2 compensation point (comp)

    double mCO2p0, mCO2beta0; ///< p0: production multiplier, beta0: relative productivity increase

    double mCO2p0, mCO2beta0; ///< p0: production multiplier, beta0: relative productivity increase

    // Light Response classes

    // Light Response classes

    Expression mLightResponseIntolerant; ///< light response function for the the most shade tolerant species

    Expression mLightResponseIntolerant; ///< light response function for the the most shade tolerant species

    Expression mLightResponseTolerant; ///< light response function for the most shade intolerant species

    Expression mLightResponseTolerant; ///< light response function for the most shade intolerant species

    Expression mLRICorrection; ///< function to modfiy LRI during read

    Expression mLRICorrection; ///< function to modfiy LRI during read

    /// container holding the seed maps

    /// container holding the seed maps

    QList<SeedDispersal*> mSeedDispersal;

    QList<SeedDispersal*> mSeedDispersal;

};

};

#endif // SPECIESSET_H

#endif // SPECIESSET_H