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#include "global.h"

#include "tree.h"

#include "grid.h"

#include "stamp.h"

#include "species.h"

#include "ressourceunit.h"

#include "model.h"

// static varaibles

FloatGrid *Tree::mGrid = 0;

HeightGrid *Tree::mHeightGrid = 0;

int Tree::m_statPrint=0;

int Tree::m_statAboveZ=0;

int Tree::m_statCreated=0;

int Tree::m_nextId=0;

void Tree::setGrid(FloatGrid* gridToStamp, Grid<HeightGridValue> *dominanceGrid)

{

    mGrid = gridToStamp; mHeightGrid = dominanceGrid;

}

// lifecycle

Tree::Tree()

{

    mDbh = mHeight = 0;

    mRU = 0; mSpecies = 0;

    mOpacity=mFoliageMass=mWoodyMass=mRootMass=mLeafArea=0.;

    mDbhDelta=mNPPReserve=mLRI=0.;

    mDebugging = false;

    mId = m_nextId++;

    m_statCreated++;

}

/** get distance and direction between two points.

  returns the distance (m), and the angle between PStart and PEnd (radians) in referenced param rAngle. */

float dist_and_direction(const QPointF &PStart, const QPointF &PEnd, float &rAngle)

{

    float dx = PEnd.x() - PStart.x();

    float dy = PEnd.y() - PStart.y();

    float d = sqrt(dx*dx + dy*dy);

    // direction:

    rAngle = atan2(dx, dy);

    return d;

}

/// dumps some core variables of a tree to a string.

QString Tree::dump()

{

    QString result = QString("id %1 species %2 dbh %3 h %4 x/y %5/%6 ru# %7 LRI %8")

                            .arg(mId).arg(mSpecies->id()).arg(mDbh).arg(mHeight)

                            .arg(mPosition.x()).arg(mPosition.y())

                            .arg(mRU->index()).arg(mLRI);

    return result;

}

void Tree::dumpList(DebugList &rTargetList)

{

    rTargetList << mId << mSpecies->id() << mDbh << mHeight  << mPosition.x() << mPosition.y()   << mRU->index() << mLRI

                << mWoodyMass << mRootMass << mFoliageMass << mLeafArea;

}

void Tree::setup()

{

    if (mDbh<=0 || mHeight<=0)

        return;

    // check stamp

    Q_ASSERT_X(mSpecies!=0, "Tree::setup()", "species is NULL");

    mStamp = mSpecies->stamp(mDbh, mHeight);

    mFoliageMass = mSpecies->biomassFoliage(mDbh);

    mRootMass = mSpecies->biomassRoot(mDbh) + mFoliageMass; // coarse root (allometry) + fine root (estimated size: foliage)

    mWoodyMass = mSpecies->biomassWoody(mDbh);

    // LeafArea[m2] = LeafMass[kg] * specificLeafArea[m2/kg]

    mLeafArea = mFoliageMass * mSpecies->specificLeafArea();

    mOpacity = 1. - exp(-0.5 * mLeafArea / mStamp->crownArea());

    mNPPReserve = 2*mFoliageMass; // initial value

    mDbhDelta = 0.1; // initial value: used in growth() to estimate diameter increment

}

//////////////////////////////////////////////////

////  Light functions (Pattern-stuff)

//////////////////////////////////////////////////

#define NOFULLDBG

//#define NOFULLOPT

void Tree::applyStamp()

{

    if (!mStamp)

        return;

    Q_ASSERT(mGrid!=0 && mStamp!=0 && mRU!=0);

    QPoint pos = mGrid->indexAt(mPosition);

    int offset = mStamp->offset();

    pos-=QPoint(offset, offset);

    float local_dom; // height of Z* on the current position

    int x,y;

    float value;

    int gr_stamp = mStamp->size();

    int grid_x, grid_y;

    float *grid_value;

    if (!mGrid->isIndexValid(pos) || !mGrid->isIndexValid(pos+QPoint(gr_stamp, gr_stamp))) {

        // todo: in this case we should use another algorithm!!!

        return;

    }

    for (y=0;y<gr_stamp; ++y) {

        grid_y = pos.y() + y;

        grid_value = mGrid->ptr(pos.x(), grid_y);

        for (x=0;x<gr_stamp;++x) {

            // suppose there is no stamping outside

            grid_x = pos.x() + x;

            local_dom = mHeightGrid->valueAtIndex(grid_x/5, grid_y/5).height;

            value = (*mStamp)(x,y); // stampvalue

            value = 1. - value*mOpacity / local_dom; // calculated value

            value = qMax(value, 0.02f); // limit value

            *grid_value++ *= value;

        }

    }

    m_statPrint++; // count # of stamp applications...

}

/** heightGrid()

  This function calculates the "dominant height field". This grid is coarser as the fine-scaled light-grid.

*/

void Tree::heightGrid()

{

    // height of Z*

    const float cellsize = mHeightGrid->cellsize();

    QPoint p = mHeightGrid->indexAt(mPosition); // pos of tree on height grid

    QPoint competition_grid = mGrid->indexAt(mPosition);

    // count trees that are on height-grid cells (used for stockable area)

    mHeightGrid->valueAtIndex(p).count++;

    int index_eastwest = competition_grid.x() % 5; // 4: very west, 0 east edge

    int index_northsouth = competition_grid.y() % 5; // 4: northern edge, 0: southern edge

    int dist[9];

    dist[3] = index_northsouth * 2 + 1; // south

    dist[1] = index_eastwest * 2 + 1; // west

    dist[5] = 10 - dist[3]; // north

    dist[7] = 10 - dist[1]; // east

    dist[8] = qMax(dist[5], dist[7]); // north-east

    dist[6] = qMax(dist[3], dist[7]); // south-east

    dist[0] = qMax(dist[3], dist[1]); // south-west

    dist[2] = qMax(dist[5], dist[1]); // north-west

    dist[4] = 0; // center cell

    /* the scheme of indices is as follows:  if sign(ix)= -1, if ix<0, 0 for ix=0, 1 for ix>0 (detto iy), then:

       index = 4 + 3*sign(ix) + sign(iy) transforms combinations of directions to unique ids (0..8), which are used above.

        e.g.: sign(ix) = -1, sign(iy) = 1 (=north-west) -> index = 4 + -3 + 1 = 2

    */

    int ringcount = int(floor(mHeight / cellsize)) + 1;

    int ix, iy;

    int ring;

    QPoint pos;

    float hdom;

    for (ix=-ringcount;ix<=ringcount;ix++)

        for (iy=-ringcount; iy<=+ringcount; iy++) {

        ring = qMax(abs(ix), abs(iy));

        QPoint pos(ix+p.x(), iy+p.y());

        if (mHeightGrid->isIndexValid(pos)) {

            float &rHGrid = mHeightGrid->valueAtIndex(pos).height;

            if (rHGrid > mHeight) // skip calculation if grid is higher than tree

                continue;

            int direction = 4 + (ix?(ix<0?-3:3):0) + (iy?(iy<0?-1:1):0); // 4 + 3*sgn(x) + sgn(y)

            hdom = mHeight - dist[direction];

            if (ring>1)

                hdom -= (ring-1)*10;

            rHGrid = qMax(rHGrid, hdom); // write value

        } // is valid

    } // for (y)

}

double Tree::readStamp()

{

    if (!mStamp)

        return 0.;

    const Stamp *stamp = mStamp->reader();

    if (!stamp)

        return 0.;

    QPoint pos = mGrid->indexAt(mPosition);

    int offset = stamp->offset();

    pos-=QPoint(offset, offset);

    QPoint p;

    int x,y;

    double sum=0.;

    for (x=0;x<stamp->size();++x) {

        for (y=0;y<stamp->size(); ++y) {

           p = pos + QPoint(x,y);

           if (mGrid->isIndexValid(p))

               sum += mGrid->valueAtIndex(p) * (*stamp)(x,y);

        }

    }

    float eigenvalue = mStamp->readSum() * mOpacity;

    mLRI = sum - eigenvalue;// additive

    float dom_height = (*mHeightGrid)[mPosition].height;

    if (dom_height>0.)

       mLRI = mLRI / dom_height;

    //mImpact = sum + eigenvalue;// multiplicative

    // read dominance field...

    if (dom_height < mHeight) {

        // if tree is higher than Z*, the dominance height

        // a part of the crown is in "full light".

        // total value = zstar/treeheight*value + 1-zstar/height

        // reformulated to:

        mLRI =  mLRI * dom_height/mHeight ;

        m_statAboveZ++;

    }

    if (fabs(mLRI < 0.000001))

        mLRI = 0.f;

    qDebug() << "Tree #"<< id() << "value" << sum << "eigenvalue" << eigenvalue << "Impact" << mLRI;

    return mLRI;

}

void Tree::readStampMul()

{

    if (!mStamp)

        return;

    const Stamp *reader = mStamp->reader();

    if (!reader)

        return;

    QPoint pos_reader = mGrid->indexAt(mPosition);

    int offset_reader = reader->offset();

    int offset_writer = mStamp->offset();

    int d_offset = offset_writer - offset_reader; // offset on the *stamp* to the crown-cells

    QPoint pos_writer=pos_reader - QPoint(offset_writer, offset_writer);

    pos_reader-=QPoint(offset_reader, offset_reader);

    QPoint p;

    //float dom_height = (*m_dominanceGrid)[m_Position];

    float local_dom;

    int x,y;

    double sum=0.;

    double value, own_value;

    float *grid_value;

    int reader_size = reader->size();

    int rx = pos_reader.x();

    int ry = pos_reader.y();

    for (y=0;y<reader_size; ++y, ++ry) {

        grid_value = mGrid->ptr(rx, ry);

        for (x=0;x<reader_size;++x) {

            //p = pos_reader + QPoint(x,y);

            //if (m_grid->isIndexValid(p)) {

            local_dom = mHeightGrid->valueAtIndex((rx+x)/5, ry/5).height; // ry: gets ++ed in outer loop, rx not

            //local_dom = m_dominanceGrid->valueAt( m_grid->cellCoordinates(p) );

            own_value = 1. - mStamp->offsetValue(x,y,d_offset)*mOpacity / local_dom; // old: dom_height;

            own_value = qMax(own_value, 0.02);

            value =  *grid_value++ / own_value; // remove impact of focal tree

            //if (value>0.)

            sum += value * (*reader)(x,y);

            //} // isIndexValid

        }

    }

    mLRI = sum;

    // read dominance field...

    // this applies only if some trees are potentially *higher* than the dominant height grid

    //if (dom_height < m_Height) {

        // if tree is higher than Z*, the dominance height

        // a part of the crown is in "full light".

    //    m_statAboveZ++;

    //    mImpact = 1. - (1. - mImpact)*dom_height/m_Height;

    //}

    if (mLRI > 1.)

        mLRI = 1.;

    //qDebug() << "Tree #"<< id() << "value" << sum << "Impact" << mImpact;

    mRU->addWLA(mLRI*mLeafArea, mLeafArea);

}

void Tree::resetStatistics()

{

    m_statPrint=0;

    m_statCreated=0;

    m_statAboveZ=0;

    m_nextId=1;

}

//////////////////////////////////////////////////

////  Growth Functions

//////////////////////////////////////////////////

void Tree::grow()

{

    // step 1: get radiation from ressource unit: radiation (MJ/tree/year) total intercepted radiation for this tree per year!

    double radiation = mRU->interceptedRadiation(mLeafArea, mLRI);

    // step 2: get fraction of PARutilized, i.e. fraction of intercepted rad that is utiliziable (per year)

    double raw_gpp_per_rad = mRU->ressourceUnitSpecies(mSpecies).prod3PG().GPPperRad();

    // GPP (without aging-effect) [gC] / year -> kg/GPP (*0.001)

    double raw_gpp = raw_gpp_per_rad * radiation * 0.001;

    /*

    if (mRU->index()==3) {

        qDebug() << "tree production: radiation: " << radiation << "gpp/rad:" << raw_gpp_per_rad << "gpp" << raw_gpp << "LRI:" << mLRI << "LeafArea:" << mLeafArea;

    }*/

    // apply aging

    double gpp = raw_gpp * 0.6; // aging

    double npp = gpp * 0.47; // respiration loss

    DBGMODE(

        if (GlobalSettings::instance()->isDebugEnabled(GlobalSettings::dTreeNPP) && isDebugging()) {

            DebugList &out = GlobalSettings::instance()->debugList(mId, GlobalSettings::dTreeNPP);

            dumpList(out); // add tree headers

            out << radiation << raw_gpp << gpp << npp;

        }

    ); // DBGMODE()

    partitioning(npp);

    mStamp = mSpecies->stamp(mDbh, mHeight); // get new stamp for updated dimensions

    // calculate the CrownFactor which reflects the opacity of the crown

    mOpacity = 1. - exp(-0.7 * mLeafArea / mStamp->crownArea());

}

// just used to test the DBG_IF_x macros...

QString test_cntr()

{

    static int cnt = 0;

    cnt++;

    return QString::number(cnt);

}

void Tree::partitioning(double npp)

{

    DBGMODE(

        if (mId==1)

            test_cntr();

    );

    double harshness = mRU->ressourceUnitSpecies(mSpecies).prod3PG().harshness();

    // add content of reserve pool

    npp += mNPPReserve;

    const double foliage_mass_allo = mSpecies->biomassFoliage(mDbh);

    const double reserve_size = 2 * foliage_mass_allo;

    double apct_wood, apct_root, apct_foliage; // allocation percentages (sum=1) (eta)

    // turnover rates

    const double &to_fol = mSpecies->turnoverLeaf();

    const double &to_root = mSpecies->turnoverRoot();

    // the turnover rate of wood depends on the size of the reserve pool:

    double to_wood = reserve_size / (mWoodyMass + reserve_size);

    apct_root = harshness;

    double b_wf = mSpecies->allometricRatio_wf(); // ratio of allometric exponents... now fixed

    // Duursma 2007, Eq. (20)

    apct_wood = (foliage_mass_allo * to_wood / npp + b_wf*(1.-apct_root) - b_wf * to_fol/npp) / ( foliage_mass_allo / mWoodyMass + b_wf );

    apct_foliage = 1. - apct_root - apct_wood;

    // Change of biomass compartments

    // Roots

    double delta_root = apct_root * npp - mRootMass * to_root;

    mRootMass += delta_root;

    // Foliage

    double delta_foliage = apct_foliage * npp - mFoliageMass * to_fol;

    mFoliageMass += delta_foliage;

    mLeafArea = mFoliageMass * mSpecies->specificLeafArea(); // update leaf area

    // Woody compartments

    // (1) transfer to reserve pool

    double gross_woody = apct_wood * npp;

    double to_reserve = qMin(reserve_size, gross_woody);

    mNPPReserve = to_reserve;

    double net_woody = gross_woody - to_reserve;

    double net_stem = 0.;

    if (net_woody > 0.) {

        // (2) calculate part of increment that is dedicated to the stem (which is a function of diameter)

        net_stem = net_woody * mSpecies->allometricFractionStem(mDbh);

        mWoodyMass += net_woody;

        //  (3) growth of diameter and height baseed on net stem increment

        grow_diameter(net_stem);

    }

    DBGMODE(

     if (GlobalSettings::instance()->isDebugEnabled(GlobalSettings::dTreePartition)

         && isDebugging() ) {

            DebugList &out = GlobalSettings::instance()->debugList(mId, GlobalSettings::dTreePartition);

            dumpList(out); // add tree headers

            out << npp << apct_foliage << apct_wood << apct_root

                    << delta_foliage << net_woody << delta_root << mNPPReserve << net_stem;

     }

    ); // DBGMODE()

    //DBGMODE(

      if (mWoodyMass<0. || mWoodyMass>10000 || mFoliageMass<0. || mFoliageMass>1000. || mRootMass<0. || mRootMass>10000

         || mNPPReserve>2000.) {

         qDebug() << "Tree:partitioning: invalid pools.";

         qDebug() << GlobalSettings::instance()->debugListCaptions(GlobalSettings::DebugOutputs(0));

         DebugList dbg; dumpList(dbg);

         qDebug() << dbg;

     } //);

    /*DBG_IF_X(mId == 1 , "Tree::partitioning", "dump", dump()

             + QString("npp %1 npp_reserve %9 sen_fol %2 sen_stem %3 sen_root %4 net_fol %5 net_stem %6 net_root %7 to_reserve %8")

               .arg(npp).arg(senescence_foliage).arg(senescence_stem).arg(senescence_root)

               .arg(net_foliage).arg(net_stem).arg(net_root).arg(to_reserve).arg(mNPPReserve) );*/

}

/** Determination of diamter and height growth based on increment of the stem mass (@p net_stem_npp).

    Refer to XXX for equations and variables.

    This function updates the dbh and height of the tree.

    The equations are based on dbh in meters!

  */

inline void Tree::grow_diameter(const double &net_stem_npp)

{

    // determine dh-ratio of increment

    // height increment is a function of light competition:

    double hd_growth = relative_height_growth(); // hd of height growth

    double d_m = mDbh / 100.; // current diameter in [m]

    const double d_delta_m = mDbhDelta / 100.; // increment of last year in [m]

    const double mass_factor = mSpecies->volumeFactor() * mSpecies->density();

    double stem_mass = mass_factor * d_m*d_m * mHeight; // result: kg, dbh[cm], h[meter]

    // factor is in diameter increment per NPP [m/kg]

    double factor_diameter = 1. / (  mass_factor * (d_m + d_delta_m)*(d_m + d_delta_m) * ( 2. * mHeight/d_m + hd_growth) );

    double delta_d_estimate = factor_diameter * net_stem_npp; // estimated dbh-inc using last years increment

    // using that dbh-increment we estimate a stem-mass-increment and the residual (Eq. 9)

    double stem_estimate = mass_factor * (d_m + delta_d_estimate)*(d_m + delta_d_estimate)*(mHeight + delta_d_estimate*hd_growth);

    double stem_residual = stem_estimate - (stem_mass + net_stem_npp);

    // the final increment is then:

    double d_increment = factor_diameter * (net_stem_npp - stem_residual); // Eq. (11)

    DBG_IF_X(d_increment<0. || d_increment>0.1, "Tree::grow_dimater", "increment out of range.", dump()

             + QString("\nhdz %1 factor_diameter %2 stem_residual %3 delta_d_estimate %4 d_increment %5 final residual(kg) %6")

               .arg(hd_growth).arg(factor_diameter).arg(stem_residual).arg(delta_d_estimate).arg(d_increment)

               .arg( mass_factor * (mDbh + d_increment)*(mDbh + d_increment)*(mHeight + d_increment*hd_growth)-((stem_mass + net_stem_npp)) ));

    DBGMODE(

        double res_final = mass_factor * (d_m + d_increment)*(d_m + d_increment)*(mHeight + d_increment*hd_growth)-((stem_mass + net_stem_npp));

        DBG_IF_X(res_final > 1, "Tree::grow_diameter", "final residual stem estimate > 1kg", dump());

        DBG_IF_X(d_increment > 10. || d_increment*hd_growth >10., "Tree::grow_diameter", "growth out of bound:",QString("d-increment %1 h-increment %2 ").arg(d_increment).arg(d_increment*hd_growth/100.) + dump());

        //dbgstruct["sen_demand"]=sen_demand;

        if (GlobalSettings::instance()->isDebugEnabled(GlobalSettings::dTreeGrowth) && isDebugging() ) {

            DebugList &out = GlobalSettings::instance()->debugList(mId, GlobalSettings::dTreeGrowth);

            dumpList(out); // add tree headers

            out << net_stem_npp << stem_mass << hd_growth << factor_diameter << delta_d_estimate*100 << d_increment*100;

        }

    ); // DBGMODE()

    d_increment = qMax(d_increment, 0.);

    // update state variables

    mDbh += d_increment*100; // convert from [m] to [cm]

    mDbhDelta = d_increment*100; // save for next year's growth

    mHeight += d_increment * hd_growth;

}

/// return the HD ratio of this year's increment based on the light status.

inline double Tree::relative_height_growth()

{

    double hd_low, hd_high;

    mSpecies->hdRange(mDbh, hd_low, hd_high);

    DBG_IF_X(hd_low>hd_high, "Tree::relative_height_growth", "hd low higher dann hd_high for ", dump());

    DBG_IF_X(hd_low < 20 || hd_high>250, "Tree::relative_height_growth", "hd out of range ", dump() + QString(" hd-low: %1 hd-high: %2").arg(hd_low).arg(hd_high));

    // scale according to LRI: if receiving much light (LRI=1), the result is hd_low (for open grown trees)

    double hd_ratio = hd_high - (hd_high-hd_low)*mLRI;

    return hd_ratio;

}

//////////////////////////////////////////////////

////  value functions

//////////////////////////////////////////////////

double Tree::volume() const

{

    /// @see Species::volumeFactor() for details

    const double volume_factor = mSpecies->volumeFactor();

    const double volume =  volume_factor * mDbh*mDbh*mHeight;

    return volume;

}