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1222 2739d 17h werner / public SVN  
1221 2739d 17h werner /branches/ public SVN  
1220 2739d 17h werner /branches/version1.0/ Version 1.0  
1218 2739d 19h werner / clean up repository - make 1.0 trunk again!  
1217 2739d 19h werner / clean up repository - make 1.0 trunk again!  
1202 2790d 17h werner /branches/iland_regen/src/ searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation).
 
1182 2885d 16h werner /branches/iland_regen/src/ Torus also effective for seed distribution
new output "SaplingDetails" (super high detail level of individual cohorts)
version information also in ilandc [move version.cpp to core]

[due to a sync problem with the SVN server, some revisions where lost: here they are:]
compiling ilandc

some code clean up - removed old code (sapling.cpp) for sapling trees and establishment.
 
1163 2955d 22h werner /branches/iland_regen/src/ removed the "sapling.h" everywhere.
open:
* establishment: use better random order of species (e.g. by providing N random lists in speciesSet)
 
1158 2957d 18h werner /branches/iland_regen/src/ further performance improvements in regeneration/sapling module.
In total (sim 80 yrs WBT 2km2, from bare ground), iLand is +- 35% faster:
* seed dispersal (not today)
* optimized use of LRI-correction
* better linearization in sapling growth (height growth potential)
 
1157 2958d 01h werner /branches/iland_regen/ merge of changes in the trunk (up to the version used for the 2016 DICE simulation batch).  
1104 3027d 23h werner /branches/iland_regen/ Branch dedicated to playing around with establishment/regeneration.
Goals are:
(i) speed up
(ii) introduction of new features for Yellowstone
 
863 3804d 18h werner /branches/port_qt5_64bit/ renaming of the FOME to AMIE.
unfortunately, some partial merge of changes in Qt4-branch.
 
855 3832d 18h werner /branches/port_qt5_64bit/src/ fixed bug in landscape output
added (not already included) mode for dynamicstand output to aggregate to ru level (without species level)
now newly recruited trees are also included in the stand statistics (ru-level).
 
837 3839d 20h werner /branches/port_qt5_64bit/src/ * added total carbon to stand output
* created a new output "landscape" for stand aggregates on landscape level (per species)
* improved error handling ModelController
* improved ilandc: now model settings can be changed via command line (and javascript function can be called)
* finalized "background external seeds"
 
824 3844d 23h werner /branches/port_qt5_64bit/src/ fixed *big* regeneration bug. The map with the height of saplings on a resource unit was used in the establishment subroutine although it was *invalid*. Now the establishment and the regeneration are (again?) in one function and use the same valid map.
this removed the strange stripes in the regeneration pattern (there should have been crashes, but weren't). Consequently, the performance debug output was modified.
added better formatting to debugtimer.cpp for large times (in hours, minutes, seconds).
 
779 4011d 18h werner /branches/port_qt5_64bit/  
671 4594d 19h werner /trunk/src/ Necessary changes for GPL licence (i.e. headers in all source files)  
639 4755d 16h werner / move current content to the "trunk"  
615 4814d 20h werner /src/ removed windows specific _isnan() calls  
587 4853d 13h werner /src/ added carbon output.
lots of changes necessary to get this done (especially budgeting of biomass pools)
 
483 4965d 22h werner /src/core/ recruitment: recruit the number of individuals provided by the Reineke equation.
(correct spelling error: reinecke -> reineke)
 
466 4972d 01h werner /src/ added fields to establishment debug output.  
454 5021d 23h werner /src/ improvements of regeneration/establishment. Looking for bug that stems obviously from copy-constructor problems (resourceUnitSpecies).  
453 5022d 12h werner /src/ sapling growth now in a basic working state. started to implement recruitment. One bug with the "maximum-establishment-height-grid" known.
added also visualization of regeneration layer. Once I have time, I should restructure the drawing/visualization code as it gets quirky (and a paper-concept is available...)
 
377 5141d 02h werner /src/core/ added aging to g_c calculation (WaterCycle).  
277 5325d 10h werner /src/ added "Gesamtwuchsleistung" i.e. total growth.  
261 5329d 15h werner /src/ * added NPP aboveground to stats
* some update in comments
 
257 5330d 13h werner /src/ added production based (tree) statistics.
StandOut after tree initialization.
some documentation polishing.
 
240 5335d 12h werner /src/ water cycle yields first results.
implemented a "createStandStatistics()" function, that calculates stocked areas, and statistics after initialization and before the actual model run.
 
234 5336d 07h werner /src/core/ added (during dev. of watercycle) new properties: area() to ResourceUnit, leafArea() to Tree, added LAI-counting to StandStatistics.  
182 5351d 14h werner /src/ stand statistics - work now, outputs can be enabled/disabled in config file  
180 5352d 07h werner /src/ created StandStatistics (similar to the solution in Picus). Each tree adds itself to the statistics object of RU x species. During yearEnd() of RessourceUnit the data is aggregated for the whole stand.