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1218 2742d 11h werner / clean up repository - make 1.0 trunk again!  
1217 2742d 11h werner / clean up repository - make 1.0 trunk again!  
1214 2742d 11h werner /branches/iland_regen/src/ fixed effect of waterlogging  
1213 2748d 07h werner /branches/iland_regen/src/ implementing the stand-wise snapshot feature (for the advanced dynamic initalization)  
1212 2748d 14h werner /branches/iland_regen/src/ iLand-caption in pro files  
1211 2748d 14h werner /branches/iland_regen/src/ added GPL headers for files that did not contain the header  
1210 2748d 15h werner /branches/iland_regen/ improve error message when Environment is not set up correctly.  
1208 2750d 09h werner /branches/iland_regen/src/ working on the Spin-up feature (some additions to ABE)  
1207 2751d 08h werner /branches/iland_regen/src/abe/ adding of "updateManagement" to rebuild a management program from an (updated) source; no documentation yet  
1204 2755d 14h werner /branches/iland_regen/src/ fixed some text strings (debug messages).  
1203 2772d 12h werner /branches/iland_regen/src/ added the missing "ActPlanting" functions for the "new" regeneration module.  
1202 2793d 09h werner /branches/iland_regen/src/ searching/fixing issues with carbon cycle: NEP as provided by carbonflow output (NPP-Rh-Mgmt) is different from NEP as derived by the delta of the carbon stocks.
As usual, very hard to track down these issues, but:
* bark beetle module: foliage loss from BB-trees now correctly routed to soil
* order of modules in model: switched disturbances and carbon cylcle (in order to correctly track all carbon changes due to disturbances)
* fixed a problem with the calculation of NPP: after disturbances stand level NPP was set to 0 (since statistics were recalculated after disturbaces, but NPP values are not available then). Introduced: StandStatistics::clearOnlyTrees()
* flow from branches to the atmosphere (decay of branches) now tracked correctly (changes the NEP calulation).
 
1200 2818d 08h werner /branches/iland_regen/src/apidoc/iLand/ JS doc  
1198 2861d 08h werner /branches/iland_regen/src/ api documentation...  
1197 2861d 14h werner /branches/iland_regen/src/ilandc/ trying to compile on valinor server  
1196 2863d 07h werner /branches/iland_regen/src/ StandGPP debug output (instead of the missing StandNPP) output  
1195 2873d 11h werner /branches/iland_regen/src/ more documentaiton...  
1194 2873d 11h werner /branches/iland_regen/src/ more documentation....  
1193 2875d 16h werner /branches/iland_regen/src/ update version  
1192 2877d 03h werner /branches/iland_regen/src/apidoc/node_modules/yuidoc-bootstrap-theme/assets/ update doc  
1191 2877d 08h werner /branches/iland_regen/src/ more documentation .... phew  
1190 2880d 06h werner /branches/iland_regen/src/ api documentation....  
1189 2881d 13h werner /branches/iland_regen/src/apidoc/ documentation API iLand  
1188 2882d 09h werner /branches/iland_regen/src/apidoc/ apidoc style, and apidoc content  
1187 2883d 07h werner /branches/iland_regen/src/apidoc/node_modules/yuidoc-bootstrap-theme/assets/ apidocs CSS file updates  
1186 2883d 08h werner /branches/iland_regen/src/apidoc/node_modules/yuidoc-bootstrap-theme/assets/ update api-doc (yuidoc)  
1185 2883d 13h werner /branches/iland_regen/src/apidoc/node_modules/ added YUIdoc bootstrap-theme  
1184 2883d 14h werner /branches/iland_regen/src/ update JS documentation  
1183 2887d 10h werner /branches/iland_regen/src/ added new output with sapling details.
"version" in core folder.
 
1182 2888d 08h werner /branches/iland_regen/src/ Torus also effective for seed distribution
new output "SaplingDetails" (super high detail level of individual cohorts)
version information also in ilandc [move version.cpp to core]

[due to a sync problem with the SVN server, some revisions where lost: here they are:]
compiling ilandc

some code clean up - removed old code (sapling.cpp) for sapling trees and establishment.
 
1181 2905d 09h werner /branches/iland_regen/src/ include LDD packages even for N<1 (choose probabilistically)

visualizing seed input from javascript
 
1180 2910d 07h werner /branches/iland_regen/src/ major rewrite of the seed distribution module:
* dispersal kernels fixed (using seeds per area, and not per radius)
* seed production now depends on leaf area of species (on source pixels)
* distribution for all source pixels (skipped the shortcut via continuously covered forest)
* probability of establishment calculated as function of available seedlings (sum of all incoming seedlings)
still testing ;)
more automation functions (e.g. to call OS commands, additional JS event handlers)
 
1179 2912d 09h werner /branches/iland_regen/src/ GUI: visualizing seed maps
minor change in seed kernel calculation
 
1178 2917d 08h werner /branches/iland_regen/src/ update the seed dispersal kernel: take the density of a point instead the density at a given radius
new option in the GUI to visualize newly created saplings
update of how sapling numbers are calculated and arrive in the output
 
1177 2919d 08h werner /branches/iland_regen/src/ updating the sapling growth (calculation of stem numbers)  
1176 2922d 08h werner /branches/iland_regen/src/core/ developing the long distance dispersal functionality;
looks as if we have a conceptual problem with how we use the seed kernel functions...
more to come...
 
1175 2929d 10h werner /branches/iland_regen/src/core/ testing change in the way the number of saplings is estimated (when several species reside on the same pixel)  
1174 2930d 08h werner /branches/iland_regen/src/ fixed a bug in the establishment / saplinggrowth debug outputs (bookkeeping)  
1172 2943d 16h werner /branches/iland_regen/src/ fixed nasty bug in fire module that caused crashes in release mode (but interestingly not in debug mode).
Reason: The ILAND_GUI #define is *not* visible when building the modules (fire, wind, barkbeetle); a conditional define in species.h has the effect that the structure (i.e. the memory address of some of the member properties) are different (specifically, the "mSeedDispersal" property). From the fire module, accessing the property resolved to a wrong memory address -> crash. Fix: moved the color-property (that is affected by the ILAND_GUI #define) to the end of the object....
 
1170 2946d 08h werner /branches/iland_regen/src/ testing the grid-runners (etc) -- they seem to work fine, whew!
fixed a problem in the fire spread (never reached the right and bottom edge of a landscape).